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  5. Tin_g06535

Tin_g06535


Description : rRNA adenosine dimethylase *(DIM1A) & original description: none


Gene families : OG0002989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002989_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g06535

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00244930 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Aob_g18932 No alias rRNA adenosine dimethylase *(DIM1A) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01018854001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Gb_34275 No alias rRNA adenosine dimethylase (DIM1A) 0.02 OrthoFinder output from all 47 species
LOC_Os07g32550.1 LOC_Os07g32550 rRNA adenosine dimethylase (DIM1B) 0.05 OrthoFinder output from all 47 species
Len_g08831 No alias rRNA adenosine dimethylase *(DIM1A) & original description: none 0.03 OrthoFinder output from all 47 species
MA_40677g0020 No alias rRNA adenosine dimethylase (DIM1A). rRNA adenosine... 0.03 OrthoFinder output from all 47 species
Ppi_g00729 No alias rRNA adenosine dimethylase *(DIM1A) & original description: none 0.03 OrthoFinder output from all 47 species
Smo116036 No alias RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from all 47 species
Solyc02g084730.3.1 Solyc02g084730 rRNA adenosine dimethylase (DIM1B) 0.05 OrthoFinder output from all 47 species
Zm00001e013790_P001 Zm00001e013790 rRNA adenosine dimethylase (DIM1A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001737 KsgA/Erm 87 299
No external refs found!