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  5. Tin_g06417

Tin_g06417 (MEE33, MSD1, ATMSD1)


Aliases : MEE33, MSD1, ATMSD1

Description : manganese superoxide dismutase *(MSD) & original description: none


Gene families : OG0002265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g06417

Target Alias Description ECC score Gene Family Method Actions
AT3G10920 MEE33, MSD1, ATMSD1 manganese superoxide dismutase 1 0.03 OrthoFinder output from all 47 species
Adi_g095333 MEE33, MSD1, ATMSD1 manganese superoxide dismutase *(MSD) & original... 0.03 OrthoFinder output from all 47 species
Cre02.g096150 MEE33, MSD1, ATMSD1 Redox homeostasis.enzymatic reactive oxygen species... 0.04 OrthoFinder output from all 47 species
Cre13.g605150 MEE33, MSD1, ATMSD1 Redox homeostasis.enzymatic reactive oxygen species... 0.02 OrthoFinder output from all 47 species
Mp1g04300.1 MEE33, MSD1, ATMSD1 manganese superoxide dismutase 0.03 OrthoFinder output from all 47 species
Nbi_g08132 MEE33, MSD1, ATMSD1 manganese superoxide dismutase *(MSD) & original... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEA Interproscan
BP GO:0006801 superoxide metabolic process IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR019832 Mn/Fe_SOD_C 113 215
IPR019831 Mn/Fe_SOD_N 25 103
No external refs found!