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  5. Tin_g05857

Tin_g05857 (RAB2A, AT-RAB2,...)


Aliases : RAB2A, AT-RAB2, RAB-B1B, ATRAB-B1B, RABB1C, ATRABB1C, ATRAB2A

Description : B-class RAB GTPase & original description: none


Gene families : OG0001412 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001412_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g05857

Target Alias Description ECC score Gene Family Method Actions
AT4G35860 ATRABB1B,... GTP-binding 2 0.03 OrthoFinder output from all 47 species
Cba_g00569 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G018500.1 RAB2A, AT-RAB2,... B-class RAB GTPase & original description:... 0.04 OrthoFinder output from all 47 species
Cre09.g390763 RAB2A, AT-RAB2,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Pir_g13295 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g007700.3.1 RAB2A, AT-RAB2,... B-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Spa_g11371 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11372 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016125 sterol metabolic process IEP HCCA
BP GO:0016126 sterol biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 8 168
No external refs found!