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  5. Tin_g05420

Tin_g05420 (U2AF35B, ATU2AF35B)


Aliases : U2AF35B, ATU2AF35B

Description : small subunit of U2AF pre-RNA splicing auxiliary factor complex & original description: none


Gene families : OG0001523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001523_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Tin_g05420

Target Alias Description ECC score Gene Family Method Actions
Aev_g08490 ATU2AF35A small subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Als_g62138 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Dcu_g06790 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Gb_08695 U2AF35B, ATU2AF35B Splicing factor U2af small subunit B OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os05g48960.4 U2AF35B,... small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
Mp6g21420.1 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
Spa_g07448 ATU2AF35A small subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0071203 WASH complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 83 139
IPR000571 Znf_CCCH 150 173
IPR000571 Znf_CCCH 14 38
No external refs found!