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Description : SMARCF component *(LFR) of SWI/SNF chromaTin remodeling complex & original description: none
Gene families : OG0003554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003554_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Tin_g05180 | |
| Cluster | HCCA: Cluster_53 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Ceric.23G031600.1 | Ceric.23G031600 | SMARCF component *(LFR) of SWI/SNF chromatin remodeling... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g03435 | No alias | transcriptional co-activator *(BET/GTE) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g30411 | No alias | SMARCF component *(LFR) of SWI/SNF chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e021878_P001 | Zm00001e021878 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003684 | damaged DNA binding | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006950 | response to stress | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140299 | small molecule sensor activity | IEP | HCCA |
| MF | GO:0140612 | DNA damage sensor activity | IEP | HCCA |
| MF | GO:0140664 | ATP-dependent DNA damage sensor activity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001487 | Bromodomain | 191 | 271 |
| No external refs found! |