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  5. Tin_g04912

Tin_g04912 (PRCGB, PBD1)


Aliases : PRCGB, PBD1

Description : beta-type-4 component *(PBD) of 26S proteasome & original description: none


Gene families : OG0004283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004283_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g04912
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272080 PRCGB, PBD1,... Protein degradation.26S proteasome.20S core... 0.03 OrthoFinder output from all 47 species
AT4G14800 PBD2 20S proteasome beta subunit D2 0.08 OrthoFinder output from all 47 species
Adi_g008050 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Aev_g00486 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Ala_g09690 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aop_g00205 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene61855.t1 PRCGB, PBD1,... beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cba_g00483 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Ceric.27G023100.1 PRCGB, PBD1,... beta-type-4 component *(PBD) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.80 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Cre14.g610950 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.11 OrthoFinder output from all 47 species
Dac_g04914 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Dcu_g08528 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Dde_g00381 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
GSVIVT01001182001 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.03 OrthoFinder output from all 47 species
LOC_Os03g48930.1 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.06 OrthoFinder output from all 47 species
MA_119122g0010 PBD2 Proteasome subunit beta type-2-B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_20372g0010 PBD2 Proteasome subunit beta type-2 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Mp4g04320.1 PRCGB, PBD1 component beta type-4 of 26S proteasome 0.08 OrthoFinder output from all 47 species
Msp_g00339 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Pir_g65663 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Pp3c20_18180V3.1 PRCGB, PBD1, Pp3c20_18180 20S proteasome beta subunit D1 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022151 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Solyc09g082320.3.1 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.1 OrthoFinder output from all 47 species
Spa_g25247 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Spa_g46825 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Spa_g53642 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Zm00001e005337_P001 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 3 182
No external refs found!