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  5. Tin_g04756

Tin_g04756


Description : RNA helicase component *(SKI2) of SUPERKILLER regulation complex & original description: none


Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g04756

Target Alias Description ECC score Gene Family Method Actions
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.07 OrthoFinder output from all 47 species
Adi_g022453 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.06 OrthoFinder output from all 47 species
Aev_g01540 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.05 OrthoFinder output from all 47 species
Aev_g17654 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Als_g01202 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.06 OrthoFinder output from all 47 species
Aob_g12480 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Aob_g29585 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Aop_g09338 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.04 OrthoFinder output from all 47 species
Azfi_s0027.g023708 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Ceric.08G061100.1 HEN2, Ceric.08G061100 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.108 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Cre02.g117900 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Dcu_g03136 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 OrthoFinder output from all 47 species
Dcu_g18967 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
GSVIVT01032255001 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
Gb_30711 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.03 OrthoFinder output from all 47 species
LOC_Os02g06500.1 LOC_Os02g06500 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.04 OrthoFinder output from all 47 species
LOC_Os11g07500.1 HEN2, LOC_Os11g07500 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Len_g20478 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Lfl_g02277 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Lfl_g02309 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Mp4g03900.1 HEN2 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Ore_g15707 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Ore_g17493 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Pp3c14_23340V3.1 Pp3c14_23340 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.01 OrthoFinder output from all 47 species
Smo79650 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
Solyc01g103080.3.1 Solyc01g103080 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Solyc05g047520.4.1 HEN2, Solyc05g047520 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Spa_g11434 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.02 OrthoFinder output from all 47 species
Zm00001e013693_P002 Zm00001e013693 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.05 OrthoFinder output from all 47 species
Zm00001e036710_P004 Zm00001e036710 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR012961 Ski2/MTR4_C 1177 1346
IPR040801 Ski2_N 137 226
IPR025696 rRNA_proc-arch_dom 845 1150
IPR011545 DEAD/DEAH_box_helicase_dom 368 514
No external refs found!