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  5. Tin_g04671

Tin_g04671


Description : REM-type transcription factor & original description: none


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g04671

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00115450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Ceric.35G050300.1 Ceric.35G050300 REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g12366 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_35990 No alias transcription factor (REM) 0.03 OrthoFinder output from all 47 species
LOC_Os03g08620.1 LOC_Os03g08620 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
LOC_Os05g40280.1 LOC_Os05g40280 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
MA_10433064g0010 No alias transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Mp2g08790.1 No alias transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004736 No alias REM-type transcription factor & original description: CDS=35-988 0.03 OrthoFinder output from all 47 species
Zm00001e020584_P001 Zm00001e020584 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Zm00001e021364_P001 Zm00001e021364 B3 domain-containing protein Os11g0197600 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Zm00001e040028_P004 Zm00001e040028 transcription factor (REM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 51 137
IPR003340 B3_DNA-bd 430 520
No external refs found!