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  5. Tin_g04049

Tin_g04049


Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g04049

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00157p00061490 RHC1A,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Adi_g008105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g044893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33056.t1 Aspi01Gene33056 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0241.g059757 No alias not classified & original description: CDS=1-1179 0.03 OrthoFinder output from all 47 species
Cba_g10356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G083100.1 Ceric.14G083100 not classified & original description: pacid=50633279... 0.05 OrthoFinder output from all 47 species
Ceric.16G066200.1 Ceric.16G066200 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.42 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dde_g08256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03331 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g11152 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01029345001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os03g20870.1 LOC_Os03g20870 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os08g38060.1 LOC_Os08g38060 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os09g06770.1 LOC_Os09g06770 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g00607 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Len_g16162 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Msp_g25713 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10220 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g15631 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41838 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01325 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g16594 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g24146 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Pnu_g16883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002229 No alias not classified & original description: CDS=1-1332 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012146 No alias not classified & original description: CDS=1-969 0.03 OrthoFinder output from all 47 species
Sam_g29753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06543 RHC1A not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g20368 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g32009 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e016135_P001 Zm00001e016135 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e027319_P001 Zm00001e027319 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Zm00001e038273_P001 Zm00001e038273 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 238 281
IPR039525 RNF126-like_zinc-ribbon 5 36
No external refs found!