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  5. Tin_g03955

Tin_g03955 (CHC1)


Aliases : CHC1

Description : SMARCD component *(SWP73) of chromaTin remodeling complex & original description: none


Gene families : OG0004548 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004548_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g03955
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Ala_g25498 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g54736 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Cba_g06522 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ceric.23G016000.1 CHC1, Ceric.23G016000 SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Dde_g16091 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01033102001 CHC1 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Len_g10118 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Nbi_g02153 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.06 OrthoFinder output from all 47 species
Ppi_g05828 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Solyc03g111250.3.1 CHC1, Solyc03g111250 component BAF60 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Zm00001e035701_P001 CHC1, Zm00001e035701 component BAF60 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 262 333
No external refs found!