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  5. Tin_g03543

Tin_g03543 (DRD2, NRPE2, NRPD2A,...)


Aliases : DRD2, NRPE2, NRPD2A, NRPD2, DMS2

Description : component *(NRPE2) of RNA polymerase V complex & original description: none


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g03543

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00247890 NRPC2,... DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT3G18090 NRPD2B nuclear RNA polymerase D2B 0.05 OrthoFinder output from all 47 species
Adi_g004148 EMB1989, RPB2, NRPB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g02637 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
Ala_g17610 EMB1989, RPB2, NRPB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02614 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
Aob_g33991 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene14108.t1 DRD2, NRPE2,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0114.g046098 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Cba_g01330 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.09 OrthoFinder output from all 47 species
Ceric.30G032600.1 NRPC2, Ceric.30G032600 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g01687 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g17296 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g24202 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Len_g16317 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
MA_10434923g0010 NRPD2B subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 OrthoFinder output from all 47 species
Msp_g14155 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Pp3c15_19410V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.02 OrthoFinder output from all 47 species
Pp3c16_10710V3.1 Pp3c16_10710 DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Pp3c3_35890V3.1 Pp3c3_35890 DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Pp3c3_37780V3.1 Pp3c3_37780 DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Pp3c9_12710V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Ppi_g07591 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Solyc10g078860.2.1 NRPC2, Solyc10g078860 subunit 2 of Pol III RNA polymerase 0.02 OrthoFinder output from all 47 species
Spa_g02441 EMB1989, RPB2, NRPB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g04426 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR007120 DNA-dir_RNAP_su2_dom 755 1114
IPR007641 RNA_pol_Rpb2_7 1116 1207
IPR007645 RNA_pol_Rpb2_3 521 583
IPR007642 RNA_pol_Rpb2_2 301 448
IPR007644 RNA_pol_bsu_protrusion 37 490
IPR007646 RNA_pol_Rpb2_4 618 677
IPR007647 RNA_pol_Rpb2_5 703 746
No external refs found!