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  5. Tin_g03296

Tin_g03296 (BARD1, ROW1, ATBARD1)


Aliases : BARD1, ROW1, ATBARD1

Description : component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination heterodimer & original description: none


Gene families : OG0001776 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001776_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g03296

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00067800 BRCA1, ATBRCA1,... DNA damage response.BRCA1–BARD1 DNA-damage response... 0.02 OrthoFinder output from all 47 species
AT1G04020 BARD1, ROW1, ATBARD1 breast cancer associated RING 1 0.02 OrthoFinder output from all 47 species
Als_g16524 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Aop_g08732 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Aop_g10443 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.08 OrthoFinder output from all 47 species
Aspi01Gene06963.t1 BRCA1, ATBRCA1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Aspi01Gene29593.t1 BRCA1, ATBRCA1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Ceric.06G016800.1 BRCA1, ATBRCA1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Ceric.16G078600.1 BARD1, ROW1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Ceric.19G066200.1 BRCA1, ATBRCA1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Ceric.30G011100.1 BARD1, ROW1,... component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Cre07.g334650 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.05 OrthoFinder output from all 47 species
Dac_g15330 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Dcu_g10242 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Dcu_g42186 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Gb_00493 BRCA1, ATBRCA1 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 OrthoFinder output from all 47 species
LOC_Os04g43300.1 BARD1, ROW1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.03 OrthoFinder output from all 47 species
LOC_Os05g43610.1 BRCA1, ATBRCA1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 OrthoFinder output from all 47 species
Len_g11293 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
MA_12220g0020 BRCA1, ATBRCA1 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.07 OrthoFinder output from all 47 species
MA_187851g0010 BRCA1, ATBRCA1 Protein BREAST CANCER SUSCEPTIBILITY 1 homolog... 0.05 OrthoFinder output from all 47 species
MA_66542g0010 BRCA1, ATBRCA1 Protein BREAST CANCER SUSCEPTIBILITY 1 homolog... 0.06 OrthoFinder output from all 47 species
Mp1g00070.1 BRCA1, ATBRCA1 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 OrthoFinder output from all 47 species
Msp_g15829 BARD1, ROW1, ATBARD1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.06 OrthoFinder output from all 47 species
Nbi_g26771 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Ppi_g16822 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008687 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018874 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Smo414577 BARD1, ROW1, ATBARD1 Protein biosynthesis.translation... 0.02 OrthoFinder output from all 47 species
Solyc06g008210.4.1 BARD1, ROW1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.03 OrthoFinder output from all 47 species
Tin_g32798 BRCA1, ATBRCA1 component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination... 0.03 OrthoFinder output from all 47 species
Zm00001e032102_P001 BRCA1, ATBRCA1,... component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001357 BRCT_dom 325 432
IPR001357 BRCT_dom 217 289
No external refs found!