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  5. Tin_g02165

Tin_g02165


Description : E3 ubiquiTin ligase *(SAUL) & original description: none


Gene families : OG0001077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g02165

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00256300 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00044p00145170 PUB44, SAUL1,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Aspi01Gene33358.t1 PUB44, SAUL1,... E3 ubiquitin ligase *(SAUL) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20847 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G047200.1 PUB44, SAUL1,... E3 ubiquitin ligase *(SAUL) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.14G057700.1 PUB44, SAUL1,... E3 ubiquitin ligase *(SAUL) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g03175 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07733 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01001115001 PUB8, B80 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01013395001 PUB44, SAUL1, ATPUB44 Protein degradation.peptide tagging.Ubiquitin... 0.08 OrthoFinder output from all 47 species
GSVIVT01024723001 PUB44, SAUL1, ATPUB44 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Gb_20043 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
LOC_Os03g45420.1 PUB44, SAUL1,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os06g16410.1 LOC_Os06g16410 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os12g17880.1 PUB44, SAUL1,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
LOC_Os12g17900.1 PUB44, SAUL1,... E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Lfl_g03394 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03427 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g28889 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g082570.3.1 PUB44, SAUL1,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Spa_g05726 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18098 No alias E3 ubiquitin ligase *(SAUL) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55795 PUB44, SAUL1, ATPUB44 E3 ubiquitin ligase *(SAUL) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g07747 PUB44, SAUL1, ATPUB44 E3 ubiquiTin ligase *(SAUL) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30532 PUB44, SAUL1, ATPUB44 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g42066 PUB44, SAUL1, ATPUB44 E3 ubiquiTin ligase *(SAUL) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e023512_P001 PUB44, SAUL1,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Zm00001e039535_P001 PUB44, SAUL1,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009143 nucleoside triphosphate catabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 904 935
IPR003613 Ubox_domain 260 333
No external refs found!