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  5. Tin_g02140

Tin_g02140


Description : not classified & original description: none


Gene families : OG0000712 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000712_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g02140

Target Alias Description ECC score Gene Family Method Actions
AT1G29370 No alias Kinase-related protein of unknown function (DUF1296) 0.02 OrthoFinder output from all 47 species
Adi_g008163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g025128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g053981 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g061004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g087204 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g11424 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02771 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11975 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g15111 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g20545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g15736 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04483 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07087 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene40924.t1 Aspi01Gene40924 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s1286.g100941 No alias not classified & original description: CDS=94-837 0.02 OrthoFinder output from all 47 species
Cba_g15326 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g26977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g60344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G033400.1 Ceric.02G033400 not classified & original description: pacid=50584302... 0.08 OrthoFinder output from all 47 species
Ceric.27G004200.1 Ceric.27G004200 not classified & original description: pacid=50604818... 0.03 OrthoFinder output from all 47 species
Ceric.29G083800.1 Ceric.29G083800 not classified & original description: pacid=50624429... 0.04 OrthoFinder output from all 47 species
Dac_g07091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09171 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g21669 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g15160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04008 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19406 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g19941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021389001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01030121001 No alias GBF-interacting protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_30926 No alias GBF-interacting protein 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os09g08670.1 LOC_Os09g08670 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Lfl_g03459 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g11160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_137710g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_768428g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g06750.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g26326 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g39958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024848 No alias not classified & original description: CDS=93-2615 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0233.g026486 No alias not classified & original description: CDS=154-2919 0.04 OrthoFinder output from all 47 species
Sam_g14569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g071180.3.1 Solyc02g071180 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc05g018750.4.1 Solyc05g018750 GBF-interacting protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc07g045230.4.1 Solyc07g045230 GBF-interacting protein 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g46247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e022213_P003 Zm00001e022213 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e026550_P001 Zm00001e026550 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e028004_P001 Zm00001e028004 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009719 GIP1_N 20 78
No external refs found!