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  5. Tin_g01305

Tin_g01305 (ATMBD9, MBD9)


Aliases : ATMBD9, MBD9

Description : component *(MBD9) of SWR1 chromaTin remodeling complex & original description: none


Gene families : OG0006711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006711_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g01305

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267510 ATMBD9, MBD9,... Methyl-CpG-binding domain-containing protein 9... 0.03 OrthoFinder output from all 47 species
AT3G01460 ATMBD9, MBD9 methyl-CPG-binding domain 9 0.02 OrthoFinder output from all 47 species
Adi_g011991 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
Aev_g28617 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Ala_g17040 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.06 OrthoFinder output from all 47 species
Als_g03908 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.06 OrthoFinder output from all 47 species
Aop_g10631 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene65658.t1 ATMBD9, MBD9,... component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Azfi_s0092.g043010 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Cba_g07789 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Ceric.19G068300.1 ATMBD9, MBD9,... component *(MBD9) of SWR1 chromatin remodeling complex &... 0.06 OrthoFinder output from all 47 species
Dac_g15509 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g37526 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.07 OrthoFinder output from all 47 species
Ehy_g19882 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.06 OrthoFinder output from all 47 species
GSVIVT01020232001 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.04 OrthoFinder output from all 47 species
Gb_22434 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.05 OrthoFinder output from all 47 species
Len_g47194 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
MA_41907g0010 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.03 OrthoFinder output from all 47 species
Mp8g01420.1 ATMBD9, MBD9 Methyl-CpG-binding domain-containing protein 9... 0.06 OrthoFinder output from all 47 species
Pir_g15536 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
Pnu_g20387 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g08937 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013974 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Sam_g18047 No alias component *(MBD9) of SWR1 chromatin remodeling complex &... 0.05 OrthoFinder output from all 47 species
Sam_g18048 No alias component *(MBD9) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Solyc05g005640.4.1 ATMBD9, MBD9,... Methyl-CpG-binding domain-containing protein 9... 0.04 OrthoFinder output from all 47 species
Spa_g49760 ATMBD9, MBD9 component *(MBD9) of SWR1 chromatin remodeling complex &... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR028941 WHIM2_dom 1684 1792
IPR019787 Znf_PHD-finger 93 140
IPR019787 Znf_PHD-finger 1266 1312
IPR028942 WHIM1_dom 1346 1387
No external refs found!