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  5. Tin_g01229

Tin_g01229 (PSBC)


Aliases : PSBC

Description : component *(PsbC/CP43) of PS-II reaction center complex & original description: none


Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Tin_g01229

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01196p00010070 PSBC,... Photosystem II CP43 reaction center protein OS=Carica papaya 0.01 OrthoFinder output from all 47 species
AMTR_s04036p00005710 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein... 0.01 OrthoFinder output from all 47 species
ATCG00280 PSBC photosystem II reaction center protein C 0.01 OrthoFinder output from all 47 species
Aev_g04878 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.01 OrthoFinder output from all 47 species
Als_g01018 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Aob_g06735 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Aspi01Gene32264.t1 PSBC, Aspi01Gene32264 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g32229 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Ceric.02G013100.1 PSBC, Ceric.02G013100 component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Ceric.12G058500.1 PSBC, Ceric.12G058500 not classified & original description: pacid=50601680... 0.03 OrthoFinder output from all 47 species
Ceric.12G087100.1 PSBC, Ceric.12G087100 not classified & original description: pacid=50602384... 0.03 OrthoFinder output from all 47 species
Ceric.24G024100.1 PSBC, Ceric.24G024100 component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Ceric.33G023300.1 PSBC, Ceric.33G023300 component *(PsbC/CP43) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Ceric.38G009700.1 PSBC, Ceric.38G009700 component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Dcu_g10666 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Dde_g30384 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Ehy_g02865 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.01 OrthoFinder output from all 47 species
GSVIVT01006662001 PSBC Photosystem II CP43 reaction center protein OS=Platanus... 0.01 OrthoFinder output from all 47 species
GSVIVT01027074001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_06826 PSBC Photosystem II CP43 reaction center protein OS=Cycas... 0.01 OrthoFinder output from all 47 species
Gb_11943 PSBC Photosystem II CP43 reaction center protein... 0.01 OrthoFinder output from all 47 species
Gb_19153 PSBC Photosystem II CP43 reaction center protein... 0.01 OrthoFinder output from all 47 species
Gb_22672 PSBC Photosystem II CP43 reaction center protein... 0.01 OrthoFinder output from all 47 species
LOC_Os02g24632.1 PSBC, LOC_Os02g24632 component PsbC/CP43 of PS-II reaction center complex 0.03 OrthoFinder output from all 47 species
LOC_Os04g16874.1 PSBC, LOC_Os04g16874 component PsbC/CP43 of PS-II reaction center complex 0.02 OrthoFinder output from all 47 species
LOC_Os10g21212.1 PSBC, LOC_Os10g21212 component PsbC/CP43 of PS-II reaction center complex 0.03 OrthoFinder output from all 47 species
Len_g16437 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Lfl_g10242 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Msp_g00655 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Nbi_g01251 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.12 OrthoFinder output from all 47 species
Ore_g02105 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Pir_g10941 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Pnu_g00846 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Ppi_g02376 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002255 PSBC not classified & original description: CDS=1-627 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004817 PSBC not classified & original description: CDS=1-717 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006637 PSBC not classified & original description: CDS=1-525 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006638 PSBC not classified & original description: CDS=1-420 0.02 OrthoFinder output from all 47 species
Sam_g14692 No alias component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Smo137689 PSBC Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 OrthoFinder output from all 47 species
Solyc00g500054.1.1 PSBC, Solyc00g500054 component PsbD/D2 of PS-II reaction center complex.... 0.02 OrthoFinder output from all 47 species
Solyc00g500136.1.1 PSBC, Solyc00g500136 component PsbD/D2 of PS-II reaction center complex.... 0.02 OrthoFinder output from all 47 species
Solyc00g500206.1.1 PSBC, Solyc00g500206 component PsbD/D2 of PS-II reaction center complex.... 0.02 OrthoFinder output from all 47 species
Solyc07g009000.1.1 PSBC, Solyc07g009000 Photosystem II CP43 reaction center protein OS=Coffea... 0.11 OrthoFinder output from all 47 species
Solyc12g027550.2.1 PSBC, Solyc12g027550 Photosystem II CP43 reaction center protein OS=Nicotiana... 0.12 OrthoFinder output from all 47 species
Zm00001e042042_P001 PSBC, Zm00001e042042 Photosystem II CP43 reaction center protein OS=Sorghum... 0.03 OrthoFinder output from all 47 species
Zm00001e042157_P001 PSBC, Zm00001e042157 Photosystem II CP43 reaction center protein OS=Sorghum... 0.04 OrthoFinder output from all 47 species
Zm00001e042269_P001 PSBC, Zm00001e042269 Photosystem II CP43 reaction center protein OS=Sorghum... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 1 403
No external refs found!