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  5. Tin_g01125

Tin_g01125 (APUM24, PUM24)


Aliases : APUM24, PUM24

Description : rRNA processing factor involved in ITS2 rRNA removal *(APUM24) & original description: none


Gene families : OG0004290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004290_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g01125
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene72600.t1 APUM24, PUM24,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14632 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Ore_g19282 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Pir_g12537 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Ppi_g09487 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Sam_g11002 No alias rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
InterPro domains Description Start Stop
IPR012959 CPL_dom 458 570
IPR001313 Pumilio_RNA-bd_rpt 404 418
IPR001313 Pumilio_RNA-bd_rpt 176 209
IPR001313 Pumilio_RNA-bd_rpt 151 173
No external refs found!