1. Home
  2. Species
  3. Tectaria incisa
  4. Sequence
  5. Tin_g00898

Tin_g00898 (CRB, HIP1.3, CSP41B)


Aliases : CRB, HIP1.3, CSP41B

Description : endoribonuclease *(CSP41) & original description: none


Gene families : OG0001864 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001864_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g00898
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00211760 CRB, HIP1.3,... RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
AMTR_s00025p00246210 CSP41A,... RNA processing.organelle machineries.ribonuclease... 0.08 OrthoFinder output from all 47 species
AT1G09340 CRB, HIP1.3, CSP41B chloroplast RNA binding 0.08 OrthoFinder output from all 47 species
AT3G63140 CSP41A chloroplast stem-loop binding protein of 41 kDa 0.08 OrthoFinder output from all 47 species
Adi_g006651 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Adi_g020154 CSP41A endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Adi_g044321 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g02158 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g03824 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g04885 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g12109 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Als_g12366 CSP41A endoribonuclease *(CSP41) & original description: none 0.09 OrthoFinder output from all 47 species
Als_g45562 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.15 OrthoFinder output from all 47 species
Aob_g01615 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g11448 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g13529 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Aop_g69969 CSP41A endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42964.t1 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0699.g082607 CSP41A endoribonuclease *(CSP41) & original description: CDS=152-1396 0.05 OrthoFinder output from all 47 species
Azfi_s0754.g085340 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: CDS=1-1245 0.07 OrthoFinder output from all 47 species
Azfi_s1450.g103210 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: CDS=130-1254 0.05 OrthoFinder output from all 47 species
Cba_g10854 CSP41A endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Cba_g10933 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.13 OrthoFinder output from all 47 species
Ceric.11G048000.1 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description:... 0.08 OrthoFinder output from all 47 species
Ceric.26G018800.1 CSP41A, Ceric.26G018800 endoribonuclease *(CSP41) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021181.14 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021720.14 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
Cre10.g435800 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Cre10.g440050 CSP41A RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Dac_g08562 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g14747 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g01117 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Dcu_g02729 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g02854 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Dde_g14746 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01176 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g06718 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01011082001 CSP41A RNA processing.organelle machineries.ribonuclease... 0.1 OrthoFinder output from all 47 species
GSVIVT01031272001 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.08 OrthoFinder output from all 47 species
Gb_01706 CSP41A endoribonuclease (CSP41) 0.05 OrthoFinder output from all 47 species
Gb_26565 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.09 OrthoFinder output from all 47 species
Gb_37146 CSP41A Chloroplast stem-loop binding protein of 41 kDa a,... 0.06 OrthoFinder output from all 47 species
LOC_Os07g11110.1 CSP41A, LOC_Os07g11110 endoribonuclease (CSP41) 0.03 OrthoFinder output from all 47 species
LOC_Os12g23180.1 CRB, HIP1.3,... endoribonuclease (CSP41) 0.08 OrthoFinder output from all 47 species
Len_g03236 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g13543 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g01195 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g12178 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
MA_115470g0010 CSP41A Chloroplast stem-loop binding protein of 41 kDa a,... 0.12 OrthoFinder output from all 47 species
MA_307070g0010 CSP41A endoribonuclease (CSP41) 0.09 OrthoFinder output from all 47 species
MA_327596g0010 CRB, HIP1.3, CSP41B no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g11680.1 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.06 OrthoFinder output from all 47 species
Mp6g11330.1 CSP41A endoribonuclease (CSP41) 0.06 OrthoFinder output from all 47 species
Msp_g23904 CSP41A endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36515 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.15 OrthoFinder output from all 47 species
Nbi_g04194 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.14 OrthoFinder output from all 47 species
Nbi_g07510 CSP41A endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07930 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g19880 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g31893 CSP41A endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14125 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Pir_g14134 CSP41A endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10254 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g01983 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g10001 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017534 CSP41A endoribonuclease *(CSP41) & original description: CDS=1450-2700 0.06 OrthoFinder output from all 47 species
Sam_g04675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11377 No alias endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g19736 No alias endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22990 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo107618 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.09 OrthoFinder output from all 47 species
Smo133157 CSP41A RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
Smo185868 CSP41A RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Smo228849 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.05 OrthoFinder output from all 47 species
Solyc06g073260.3.1 CRB, HIP1.3,... endoribonuclease (CSP41) 0.08 OrthoFinder output from all 47 species
Solyc09g065180.3.1 CSP41A, Solyc09g065180 endoribonuclease (CSP41) 0.05 OrthoFinder output from all 47 species
Spa_g10009 CSP41A endoribonuclease *(CSP41) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12780 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.14 OrthoFinder output from all 47 species
Zm00001e029297_P001 CRB, HIP1.3,... endoribonuclease (CSP41) 0.06 OrthoFinder output from all 47 species
Zm00001e033112_P001 CSP41A, Zm00001e033112 endoribonuclease (CSP41) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 90 242
No external refs found!