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  5. Tin_g00806

Tin_g00806


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g00806
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00085080 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g018223 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g025859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g079530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g083877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g083878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01755 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13731 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0214.g058333 No alias not classified & original description: CDS=705-1877 0.02 OrthoFinder output from all 47 species
Azfi_s1420.g102857 No alias not classified & original description: CDS=709-1824 0.03 OrthoFinder output from all 47 species
Ceric.01G051600.1 Ceric.01G051600 not classified & original description: pacid=50592490... 0.06 OrthoFinder output from all 47 species
Ceric.25G014900.1 Ceric.25G014900 not classified & original description: pacid=50594354... 0.01 OrthoFinder output from all 47 species
Ceric.25G071400.1 Ceric.25G071400 not classified & original description: pacid=50593370... 0.08 OrthoFinder output from all 47 species
Ceric.27G020300.1 Ceric.27G020300 not classified & original description: pacid=50605628... 0.04 OrthoFinder output from all 47 species
Ceric.31G061400.1 Ceric.31G061400 not classified & original description: pacid=50575101... 0.04 OrthoFinder output from all 47 species
Dcu_g04880 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g15768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09675 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g11399 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13333 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16481 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g16482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02255 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g33196 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g40752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000825 No alias not classified & original description: CDS=373-1662 0.03 OrthoFinder output from all 47 species
Sam_g27184 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc02g090910.3.1 Solyc02g090910 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g16749 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g18082 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g22004 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e018673_P002 Zm00001e018673 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e028338_P001 Zm00001e028338 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003937 IMP cyclohydrolase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 297 354
IPR000504 RRM_dom 101 161
IPR000504 RRM_dom 13 79
No external refs found!