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  5. Smo420048

Smo420048 (PACid_15409825)


Aliases : PACid_15409825

Description : 29.5.11 protein.degradation.ubiquitin ubiquitin-specific protease 19 (UBP19) FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity INVOLVED IN: ubiquitin-dependent protein catabolic process EXPRESSED IN: 31 plant structures EXPRESSED DURING: 15 growth stages CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394) BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1). & (loc_os06g44380.1 : 457.0


Gene families : OG_01_0000134 (Gene family) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo420048
Cluster HCCA cluster: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
AT4G24560 UBP16 ubiquitin-specific protease 16 0.02 Gene family
GSVIVT01033166001 No alias 29.5.11 protein.degradation.ubiquitin ubiquitin-specific... 0.02 Gene family
GSVIVT01038082001 No alias 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.02 Gene family
LOC_Os02g55180 Os02g0795000 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.02 Gene family
LOC_Os06g44380 Os06g0654000 29.5.11 protein.degradation.ubiquitin ubiquitin-specific... 0.04 Gene family
MA_10429414g0020 No alias 29.5.11 protein.degradation.ubiquitin ubiquitin-specific... 0.02 Gene family
MA_834843g0010 No alias 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.01 Gene family
Solyc04g076210.2.1 Solyc04g076210.2 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.02 Gene family
Solyc07g061780.3.1 Solyc07g061780.3 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.02 Gene family
Solyc08g069050.3.1 Solyc08g069050.3 29.5.11 protein.degradation.ubiquitin ubiquitin-specific... 0.01 Gene family
Zm00001d010710 GRMZM2G060327 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.02 Gene family
Zm00001d016165 GRMZM2G126447 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.03 Gene family
Zm00001d029503 No alias 29.5.11 protein.degradation.ubiquitin Encodes a... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002893 Znf_MYND 92 129
No external refs found!