ATCG00680 (PSBB)

Aliases : PSBB

Description : photosystem II reaction center protein B

Gene families : OG_01_0002438 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002438_tree ,
OG_02_0001920 (LandPlants) Phylogenetic Tree(s): OG_02_0001920_tree ,
OG_03_0001593 (SeedPlants) Phylogenetic Tree(s): OG_03_0001593_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00680
Cluster	HCCA: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00585p00000100	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem II.PS-II...	0.14	Archaeplastida
GSVIVT01006503001	No alias	Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris	0.09	Archaeplastida
GSVIVT01028641001	No alias	Photosystem II CP47 reaction center protein...	0.01	Archaeplastida
Gb_23567	No alias	component PsbB/CP47 of PS-II reaction center complex	0.18	Archaeplastida
Gb_27294	No alias	Photosystem II CP47 reaction center protein OS=Cycas...	0.19	Archaeplastida
Gb_40206	No alias	Photosystem II CP47 reaction center protein...	0.03	Archaeplastida
LOC_Os06g39708.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.51	Archaeplastida
LOC_Os09g04680.1	No alias	Photosystem II CP47 reaction center protein OS=Oryza...	0.4	Archaeplastida
LOC_Os10g21310.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.45	Archaeplastida
LOC_Os12g10600.1	No alias	Photosystem II CP47 reaction center protein OS=Oryza...	0.06	Archaeplastida
Mpzg01020.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.09	Archaeplastida
Smo137729	No alias	Photosystem II CP47 reaction center protein OS=Angiopteris evecta	0.24	Archaeplastida
Solyc00g500024.1.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.46	Archaeplastida
Solyc00g500071.1.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.46	Archaeplastida
AMTR_s00585p00000100	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem II.PS-II...	0.14	LandPlants
GSVIVT01006503001	No alias	Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris	0.08	LandPlants
GSVIVT01028641001	No alias	Photosystem II CP47 reaction center protein...	0.01	LandPlants
Gb_23567	No alias	component PsbB/CP47 of PS-II reaction center complex	0.18	LandPlants
Gb_27294	No alias	Photosystem II CP47 reaction center protein OS=Cycas...	0.18	LandPlants
Gb_40206	No alias	Photosystem II CP47 reaction center protein...	0.03	LandPlants
LOC_Os06g39708.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.5	LandPlants
LOC_Os09g04680.1	No alias	Photosystem II CP47 reaction center protein OS=Oryza...	0.4	LandPlants
LOC_Os10g21310.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.44	LandPlants
LOC_Os12g10600.1	No alias	Photosystem II CP47 reaction center protein OS=Oryza...	0.06	LandPlants
Mpzg01020.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.09	LandPlants
Smo137729	No alias	Photosystem II CP47 reaction center protein OS=Angiopteris evecta	0.23	LandPlants
Solyc00g500024.1.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.46	LandPlants
Solyc00g500071.1.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.46	LandPlants
AMTR_s00585p00000100	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.photosystem II.PS-II...	0.14	SeedPlants
GSVIVT01006503001	No alias	Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris	0.08	SeedPlants
GSVIVT01028641001	No alias	Photosystem II CP47 reaction center protein...	0.01	SeedPlants
Gb_23567	No alias	component PsbB/CP47 of PS-II reaction center complex	0.18	SeedPlants
Gb_27294	No alias	Photosystem II CP47 reaction center protein OS=Cycas...	0.19	SeedPlants
Gb_40206	No alias	Photosystem II CP47 reaction center protein...	0.03	SeedPlants
LOC_Os06g39708.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.5	SeedPlants
LOC_Os09g04680.1	No alias	Photosystem II CP47 reaction center protein OS=Oryza...	0.4	SeedPlants
LOC_Os10g21310.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.44	SeedPlants
LOC_Os12g10600.1	No alias	Photosystem II CP47 reaction center protein OS=Oryza...	0.06	SeedPlants
Solyc00g500024.1.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.43	SeedPlants
Solyc00g500071.1.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.43	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription, elongation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009539	photosystem II reaction center	TAS	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010207	photosystem II assembly	IMP	Interproscan
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
CC	GO:0010287	plastoglobule	IDA	Interproscan
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016168	chlorophyll binding	TAS	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
BP	GO:0019684	photosynthesis, light reaction	TAS	Interproscan
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000932	PS_antenna-like	1	500

External Links

No external refs found!

ATCG00680 (PSBB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation