ATCG00680 (PSBB)


Aliases : PSBB

Description : photosystem II reaction center protein B


Gene families : OG_01_0002438 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002438_tree ,
OG_02_0001920 (LandPlants) Phylogenetic Tree(s): OG_02_0001920_tree ,
OG_03_0001593 (SeedPlants) Phylogenetic Tree(s): OG_03_0001593_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATCG00680
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00585p00000100 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.14 Archaeplastida
GSVIVT01006503001 No alias Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris 0.09 Archaeplastida
GSVIVT01028641001 No alias Photosystem II CP47 reaction center protein... 0.01 Archaeplastida
Gb_23567 No alias component PsbB/CP47 of PS-II reaction center complex 0.18 Archaeplastida
Gb_27294 No alias Photosystem II CP47 reaction center protein OS=Cycas... 0.19 Archaeplastida
Gb_40206 No alias Photosystem II CP47 reaction center protein... 0.03 Archaeplastida
LOC_Os06g39708.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.51 Archaeplastida
LOC_Os09g04680.1 No alias Photosystem II CP47 reaction center protein OS=Oryza... 0.4 Archaeplastida
LOC_Os10g21310.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.45 Archaeplastida
LOC_Os12g10600.1 No alias Photosystem II CP47 reaction center protein OS=Oryza... 0.06 Archaeplastida
Mpzg01020.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.09 Archaeplastida
Smo137729 No alias Photosystem II CP47 reaction center protein OS=Angiopteris evecta 0.24 Archaeplastida
Solyc00g500024.1.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.46 Archaeplastida
Solyc00g500071.1.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.46 Archaeplastida
AMTR_s00585p00000100 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.14 LandPlants
GSVIVT01006503001 No alias Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris 0.08 LandPlants
GSVIVT01028641001 No alias Photosystem II CP47 reaction center protein... 0.01 LandPlants
Gb_23567 No alias component PsbB/CP47 of PS-II reaction center complex 0.18 LandPlants
Gb_27294 No alias Photosystem II CP47 reaction center protein OS=Cycas... 0.18 LandPlants
Gb_40206 No alias Photosystem II CP47 reaction center protein... 0.03 LandPlants
LOC_Os06g39708.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.5 LandPlants
LOC_Os09g04680.1 No alias Photosystem II CP47 reaction center protein OS=Oryza... 0.4 LandPlants
LOC_Os10g21310.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.44 LandPlants
LOC_Os12g10600.1 No alias Photosystem II CP47 reaction center protein OS=Oryza... 0.06 LandPlants
Mpzg01020.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.09 LandPlants
Smo137729 No alias Photosystem II CP47 reaction center protein OS=Angiopteris evecta 0.23 LandPlants
Solyc00g500024.1.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.46 LandPlants
Solyc00g500071.1.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.46 LandPlants
AMTR_s00585p00000100 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.14 SeedPlants
GSVIVT01006503001 No alias Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris 0.08 SeedPlants
GSVIVT01028641001 No alias Photosystem II CP47 reaction center protein... 0.01 SeedPlants
Gb_23567 No alias component PsbB/CP47 of PS-II reaction center complex 0.18 SeedPlants
Gb_27294 No alias Photosystem II CP47 reaction center protein OS=Cycas... 0.19 SeedPlants
Gb_40206 No alias Photosystem II CP47 reaction center protein... 0.03 SeedPlants
LOC_Os06g39708.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.5 SeedPlants
LOC_Os09g04680.1 No alias Photosystem II CP47 reaction center protein OS=Oryza... 0.4 SeedPlants
LOC_Os10g21310.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.44 SeedPlants
LOC_Os12g10600.1 No alias Photosystem II CP47 reaction center protein OS=Oryza... 0.06 SeedPlants
Solyc00g500024.1.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.43 SeedPlants
Solyc00g500071.1.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.43 SeedPlants

Type GO Term Name Evidence Source
BP GO:0006091 generation of precursor metabolites and energy RCA Interproscan
BP GO:0006354 DNA-templated transcription, elongation RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009534 chloroplast thylakoid IDA Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
CC GO:0009539 photosystem II reaction center TAS Interproscan
CC GO:0009579 thylakoid IDA Interproscan
BP GO:0010207 photosystem II assembly IMP Interproscan
BP GO:0010207 photosystem II assembly RCA Interproscan
CC GO:0010287 plastoglobule IDA Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
CC GO:0016020 membrane IDA Interproscan
MF GO:0016168 chlorophyll binding TAS Interproscan
BP GO:0019684 photosynthesis, light reaction RCA Interproscan
BP GO:0019684 photosynthesis, light reaction TAS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000932 PS_antenna-like 1 500
No external refs found!