Smo419575 (PACid_15410552)


Aliases : PACid_15410552

Description : 10.7 cell wall.modification expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A16 (EXPA16) INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening LOCATED IN: endomembrane system, extracellular region EXPRESSED IN: 19 plant structures EXPRESSED DURING: 10 growth stages CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117) BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1) Has 2167 Blast hits to 2164 proteins in 159 species: Archae - 0 Bacteria - 6 Metazoa - 0 Fungi - 38 Plants - 2087 Viruses - 0 Other Eukaryotes - 36 (source: NCBI BLink). (original description: no original description)'


Gene families : OG_01_0000017 (Gene family) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo419575
Cluster HCCA cluster: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Cre08.g381550 No alias No description available 0.01 Gene family
GSVIVT01025509001 No alias 10.7 cell wall.modification Encodes an expansin. Naming... 0.02 Gene family
GSVIVT01029411001 No alias 10.7 cell wall.modification Encodes an expansin. Naming... 0.03 Gene family
MA_10020g0010 No alias 10.7 cell wall.modification Encodes an expansin. Naming... 0.04 Gene family
MA_30127g0010 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
MA_36587g0010 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
MA_915221g0010 No alias 10.7 cell wall.modification Member of Alpha-Expansin... 0.02 Gene family
Solyc04g081870.3.1 Solyc04g081870.3 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Solyc05g007830.3.1 Solyc05g007830.3 10.7 cell wall.modification member of Alpha-Expansin... 0.04 Gene family
Zm00001d031904 GRMZM2G139695 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Zm00001d032876 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
Zm00001d032886 GRMZM2G414779 10.7 cell wall.modification member of Alpha-Expansin... 0.01 Gene family
Zm00001d034663 GRMZM2G368886 10.7 cell wall.modification member of Alpha-Expansin... 0.02 Gene family
Zm00001d035102 No alias 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family
Zm00001d035111 GRMZM2G064174 10.7 cell wall.modification member of Alpha-Expansin... 0.03 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007117 Expansin_CBD 158 234
No external refs found!