ATCG00540 (PETA)

Aliases : PETA

Description : photosynthetic electron transfer A

Gene families : OG_01_0002944 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002944_tree ,
OG_02_0002184 (LandPlants) Phylogenetic Tree(s): OG_02_0002184_tree ,
OG_03_0001363 (SeedPlants) Phylogenetic Tree(s): OG_03_0001363_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00540
Cluster	HCCA: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00334p00011840	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.cytochrome b6/f...	0.03	Archaeplastida
GSVIVT01015185001	No alias	Cytochrome f OS=Vitis vinifera	0.08	Archaeplastida
Gb_37933	No alias	Cytochrome f OS=Cycas taitungensis (sp\|a6h5j1\|cyf_cycta : 137.0)	0.19	Archaeplastida
Gb_41662	No alias	Cytochrome f OS=Cycas taitungensis (sp\|a6h5j1\|cyf_cycta : 175.0)	0.19	Archaeplastida
LOC_Os01g65902.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.55	Archaeplastida
LOC_Os02g24596.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.09	Archaeplastida
LOC_Os06g39738.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.32	Archaeplastida
LOC_Os08g15280.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.07	Archaeplastida
LOC_Os10g21290.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.03	Archaeplastida
Mp1g27760.1	No alias	no hits & (original description: none)	0.12	Archaeplastida
Smo236857	No alias	Photosynthesis.photophosphorylation.cytochrome b6/f...	0.26	Archaeplastida
Solyc00g500020.1.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.55	Archaeplastida
Solyc00g500067.1.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.55	Archaeplastida
Solyc10g045220.1.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.59	Archaeplastida
Zm00001e003903_P001	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.03	Archaeplastida
Zm00001e010391_P001	No alias	No annotation	0.15	Archaeplastida
Zm00001e015951_P001	No alias	No annotation	0.07	Archaeplastida
Zm00001e042028_P001	No alias	No annotation	0.03	Archaeplastida
Zm00001e042049_P001	No alias	No annotation	0.12	Archaeplastida
Zm00001e042066_P001	No alias	No annotation	0.18	Archaeplastida
Zm00001e042084_P001	No alias	No annotation	0.18	Archaeplastida
Zm00001e042147_P001	No alias	No annotation	0.03	Archaeplastida
Zm00001e042161_P001	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.06	Archaeplastida
Zm00001e042498_P001	No alias	Cytochrome f OS=Zea mays (sp\|p46617\|cyf_maize : 342.0)	0.16	Archaeplastida
AMTR_s00334p00011840	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.cytochrome b6/f...	0.03	LandPlants
GSVIVT01015185001	No alias	Cytochrome f OS=Vitis vinifera	0.08	LandPlants
Gb_37933	No alias	Cytochrome f OS=Cycas taitungensis (sp\|a6h5j1\|cyf_cycta : 137.0)	0.18	LandPlants
Gb_41662	No alias	Cytochrome f OS=Cycas taitungensis (sp\|a6h5j1\|cyf_cycta : 175.0)	0.18	LandPlants
LOC_Os01g65902.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.54	LandPlants
LOC_Os02g24596.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.08	LandPlants
LOC_Os06g39738.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.31	LandPlants
LOC_Os08g15280.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.07	LandPlants
LOC_Os10g21290.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.03	LandPlants
Mp1g27760.1	No alias	no hits & (original description: none)	0.12	LandPlants
Smo236857	No alias	Photosynthesis.photophosphorylation.cytochrome b6/f...	0.25	LandPlants
Solyc00g500020.1.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.54	LandPlants
Solyc00g500067.1.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.54	LandPlants
Solyc10g045220.1.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.57	LandPlants
Zm00001e003903_P001	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.03	LandPlants
Zm00001e010391_P001	No alias	No annotation	0.15	LandPlants
Zm00001e015951_P001	No alias	No annotation	0.07	LandPlants
Zm00001e042028_P001	No alias	No annotation	0.03	LandPlants
Zm00001e042049_P001	No alias	No annotation	0.11	LandPlants
Zm00001e042066_P001	No alias	No annotation	0.17	LandPlants
Zm00001e042084_P001	No alias	No annotation	0.17	LandPlants
Zm00001e042147_P001	No alias	No annotation	0.03	LandPlants
Zm00001e042161_P001	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.06	LandPlants
Zm00001e042498_P001	No alias	Cytochrome f OS=Zea mays (sp\|p46617\|cyf_maize : 342.0)	0.16	LandPlants
AMTR_s00334p00011840	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.cytochrome b6/f...	0.03	SeedPlants
GSVIVT01015185001	No alias	Cytochrome f OS=Vitis vinifera	0.07	SeedPlants
Gb_37933	No alias	Cytochrome f OS=Cycas taitungensis (sp\|a6h5j1\|cyf_cycta : 137.0)	0.19	SeedPlants
Gb_41662	No alias	Cytochrome f OS=Cycas taitungensis (sp\|a6h5j1\|cyf_cycta : 175.0)	0.18	SeedPlants
LOC_Os01g65902.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.54	SeedPlants
LOC_Os02g24596.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.08	SeedPlants
LOC_Os06g39738.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.3	SeedPlants
LOC_Os08g15280.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.07	SeedPlants
LOC_Os10g21290.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.03	SeedPlants
Solyc00g500020.1.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.51	SeedPlants
Solyc00g500067.1.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.51	SeedPlants
Solyc10g045220.1.1	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.54	SeedPlants
Zm00001e003903_P001	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.03	SeedPlants
Zm00001e010391_P001	No alias	No annotation	0.16	SeedPlants
Zm00001e015951_P001	No alias	No annotation	0.07	SeedPlants
Zm00001e042028_P001	No alias	No annotation	0.03	SeedPlants
Zm00001e042049_P001	No alias	No annotation	0.12	SeedPlants
Zm00001e042066_P001	No alias	No annotation	0.18	SeedPlants
Zm00001e042084_P001	No alias	No annotation	0.18	SeedPlants
Zm00001e042147_P001	No alias	No annotation	0.03	SeedPlants
Zm00001e042161_P001	No alias	apocytochrome f component PetA of cytochrome b6/f complex	0.06	SeedPlants
Zm00001e042498_P001	No alias	Cytochrome f OS=Zea mays (sp\|p46617\|cyf_maize : 342.0)	0.17	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription, elongation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009055	electron transfer activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009512	cytochrome b6f complex	TAS	Interproscan
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009767	photosynthetic electron transport chain	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022900	electron transport chain	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
MF	GO:0045158	electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	TAS	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
CC	GO:0070069	cytochrome complex	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR024094	Cyt_f_lg_dom	36	190
IPR002325	Cyt_f	202	320

External Links

No external refs found!

ATCG00540 (PETA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation