ATCG00520 (YCF4)


Aliases : YCF4

Description : unfolded protein binding


Gene families : OG_01_0007529 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007529_tree ,
OG_02_0008087 (LandPlants) Phylogenetic Tree(s): OG_02_0008087_tree ,
OG_03_0006268 (SeedPlants) Phylogenetic Tree(s): OG_03_0006268_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATCG00520
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02490p00007250 evm_27.TU.AmTr_v1... Photosystem I assembly protein Ycf4 OS=Amborella trichopoda 0.12 Archaeplastida
GSVIVT01030619001 No alias Photosystem I assembly protein Ycf4 OS=Vitis vinifera 0.11 Archaeplastida
Gb_22391 No alias YCF4 protein involved in PS-I assembly 0.05 Archaeplastida
LOC_Os01g58049.1 No alias YCF4 protein involved in PS-I assembly 0.05 Archaeplastida
LOC_Os02g24604.1 No alias YCF4 protein involved in PS-I assembly 0.48 Archaeplastida
LOC_Os06g39744.1 No alias YCF4 protein involved in PS-I assembly 0.48 Archaeplastida
MA_36633g0010 No alias Photosystem I assembly protein Ycf4 OS=Pinus koraiensis... 0.02 Archaeplastida
Mpzg00380.1 No alias YCF4 protein involved in PS-I assembly 0.04 Archaeplastida
Solyc00g500019.1.1 No alias Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.52 Archaeplastida
Solyc00g500066.1.1 No alias Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.32 Archaeplastida
Solyc04g039810.1.1 No alias Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.03 Archaeplastida
AMTR_s02490p00007250 evm_27.TU.AmTr_v1... Photosystem I assembly protein Ycf4 OS=Amborella trichopoda 0.12 LandPlants
GSVIVT01030619001 No alias Photosystem I assembly protein Ycf4 OS=Vitis vinifera 0.1 LandPlants
Gb_22391 No alias YCF4 protein involved in PS-I assembly 0.05 LandPlants
LOC_Os01g58049.1 No alias YCF4 protein involved in PS-I assembly 0.05 LandPlants
LOC_Os02g24604.1 No alias YCF4 protein involved in PS-I assembly 0.47 LandPlants
LOC_Os06g39744.1 No alias YCF4 protein involved in PS-I assembly 0.47 LandPlants
MA_36633g0010 No alias Photosystem I assembly protein Ycf4 OS=Pinus koraiensis... 0.02 LandPlants
Mpzg00380.1 No alias YCF4 protein involved in PS-I assembly 0.04 LandPlants
Solyc00g500019.1.1 No alias Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.51 LandPlants
Solyc00g500066.1.1 No alias Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.3 LandPlants
Solyc04g039810.1.1 No alias Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.03 LandPlants
AMTR_s02490p00007250 evm_27.TU.AmTr_v1... Photosystem I assembly protein Ycf4 OS=Amborella trichopoda 0.13 SeedPlants
GSVIVT01030619001 No alias Photosystem I assembly protein Ycf4 OS=Vitis vinifera 0.11 SeedPlants
Gb_22391 No alias YCF4 protein involved in PS-I assembly 0.04 SeedPlants
LOC_Os01g58049.1 No alias YCF4 protein involved in PS-I assembly 0.04 SeedPlants
LOC_Os02g24604.1 No alias YCF4 protein involved in PS-I assembly 0.48 SeedPlants
LOC_Os06g39744.1 No alias YCF4 protein involved in PS-I assembly 0.47 SeedPlants
MA_36633g0010 No alias Photosystem I assembly protein Ycf4 OS=Pinus koraiensis... 0.01 SeedPlants
Solyc00g500019.1.1 No alias Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.47 SeedPlants
Solyc00g500066.1.1 No alias Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.24 SeedPlants
Solyc04g039810.1.1 No alias Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... 0.03 SeedPlants

Type GO Term Name Evidence Source
BP GO:0006091 generation of precursor metabolites and energy RCA Interproscan
BP GO:0006354 DNA-templated transcription, elongation RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009507 chloroplast TAS Interproscan
BP GO:0010207 photosystem II assembly RCA Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
BP GO:0019684 photosynthesis, light reaction RCA Interproscan
BP GO:0048564 photosystem I assembly TAS Interproscan
MF GO:0051082 unfolded protein binding TAS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003359 PSI_Ycf4_assembly 7 182
No external refs found!