ATCG00520 (YCF4)

Aliases : YCF4

Description : unfolded protein binding

Gene families : OG_01_0007529 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007529_tree ,
OG_02_0008087 (LandPlants) Phylogenetic Tree(s): OG_02_0008087_tree ,
OG_03_0006268 (SeedPlants) Phylogenetic Tree(s): OG_03_0006268_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00520
Cluster	HCCA: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s02490p00007250	evm_27.TU.AmTr_v1...	Photosystem I assembly protein Ycf4 OS=Amborella trichopoda	0.12	Archaeplastida
GSVIVT01030619001	No alias	Photosystem I assembly protein Ycf4 OS=Vitis vinifera	0.11	Archaeplastida
Gb_22391	No alias	YCF4 protein involved in PS-I assembly	0.05	Archaeplastida
LOC_Os01g58049.1	No alias	YCF4 protein involved in PS-I assembly	0.05	Archaeplastida
LOC_Os02g24604.1	No alias	YCF4 protein involved in PS-I assembly	0.48	Archaeplastida
LOC_Os06g39744.1	No alias	YCF4 protein involved in PS-I assembly	0.48	Archaeplastida
MA_36633g0010	No alias	Photosystem I assembly protein Ycf4 OS=Pinus koraiensis...	0.02	Archaeplastida
Mpzg00380.1	No alias	YCF4 protein involved in PS-I assembly	0.04	Archaeplastida
Solyc00g500019.1.1	No alias	Photosystem I assembly protein Ycf4 OS=Solanum tuberosum...	0.52	Archaeplastida
Solyc00g500066.1.1	No alias	Photosystem I assembly protein Ycf4 OS=Solanum tuberosum...	0.32	Archaeplastida
Solyc04g039810.1.1	No alias	Photosystem I assembly protein Ycf4 OS=Solanum tuberosum...	0.03	Archaeplastida
AMTR_s02490p00007250	evm_27.TU.AmTr_v1...	Photosystem I assembly protein Ycf4 OS=Amborella trichopoda	0.12	LandPlants
GSVIVT01030619001	No alias	Photosystem I assembly protein Ycf4 OS=Vitis vinifera	0.1	LandPlants
Gb_22391	No alias	YCF4 protein involved in PS-I assembly	0.05	LandPlants
LOC_Os01g58049.1	No alias	YCF4 protein involved in PS-I assembly	0.05	LandPlants
LOC_Os02g24604.1	No alias	YCF4 protein involved in PS-I assembly	0.47	LandPlants
LOC_Os06g39744.1	No alias	YCF4 protein involved in PS-I assembly	0.47	LandPlants
MA_36633g0010	No alias	Photosystem I assembly protein Ycf4 OS=Pinus koraiensis...	0.02	LandPlants
Mpzg00380.1	No alias	YCF4 protein involved in PS-I assembly	0.04	LandPlants
Solyc00g500019.1.1	No alias	Photosystem I assembly protein Ycf4 OS=Solanum tuberosum...	0.51	LandPlants
Solyc00g500066.1.1	No alias	Photosystem I assembly protein Ycf4 OS=Solanum tuberosum...	0.3	LandPlants
Solyc04g039810.1.1	No alias	Photosystem I assembly protein Ycf4 OS=Solanum tuberosum...	0.03	LandPlants
AMTR_s02490p00007250	evm_27.TU.AmTr_v1...	Photosystem I assembly protein Ycf4 OS=Amborella trichopoda	0.13	SeedPlants
GSVIVT01030619001	No alias	Photosystem I assembly protein Ycf4 OS=Vitis vinifera	0.11	SeedPlants
Gb_22391	No alias	YCF4 protein involved in PS-I assembly	0.04	SeedPlants
LOC_Os01g58049.1	No alias	YCF4 protein involved in PS-I assembly	0.04	SeedPlants
LOC_Os02g24604.1	No alias	YCF4 protein involved in PS-I assembly	0.48	SeedPlants
LOC_Os06g39744.1	No alias	YCF4 protein involved in PS-I assembly	0.47	SeedPlants
MA_36633g0010	No alias	Photosystem I assembly protein Ycf4 OS=Pinus koraiensis...	0.01	SeedPlants
Solyc00g500019.1.1	No alias	Photosystem I assembly protein Ycf4 OS=Solanum tuberosum...	0.47	SeedPlants
Solyc00g500066.1.1	No alias	Photosystem I assembly protein Ycf4 OS=Solanum tuberosum...	0.24	SeedPlants
Solyc04g039810.1.1	No alias	Photosystem I assembly protein Ycf4 OS=Solanum tuberosum...	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription, elongation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009507	chloroplast	TAS	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
BP	GO:0015979	photosynthesis	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048564	photosystem I assembly	TAS	Interproscan
MF	GO:0051082	unfolded protein binding	TAS	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003359	PSI_Ycf4_assembly	7	182

External Links

No external refs found!

ATCG00520 (YCF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation