ATCG00490 (RBCL)


Aliases : RBCL

Description : ribulose-bisphosphate carboxylases


Gene families : OG_01_0001030 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001030_tree ,
OG_02_0000707 (LandPlants) Phylogenetic Tree(s): OG_02_0000707_tree ,
OG_03_0000483 (SeedPlants) Phylogenetic Tree(s): OG_03_0000483_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATCG00490
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.12 Archaeplastida
AMTR_s00012p00184400 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain... 0.12 Archaeplastida
AMTR_s00606p00006850 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.12 Archaeplastida
GSVIVT01013856001 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.1 Archaeplastida
GSVIVT01022403001 No alias Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.09 Archaeplastida
Gb_07644 No alias Ribulose bisphosphate carboxylase large chain... 0.18 Archaeplastida
Gb_15502 No alias Ribulose bisphosphate carboxylase large chain... 0.18 Archaeplastida
Gb_18620 No alias Ribulose bisphosphate carboxylase large chain... 0.03 Archaeplastida
Gb_25934 No alias Ribulose bisphosphate carboxylase large chain... 0.02 Archaeplastida
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.09 Archaeplastida
Gb_37464 No alias Ribulose bisphosphate carboxylase large chain... 0.18 Archaeplastida
LOC_Os01g58020.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.29 Archaeplastida
LOC_Os05g35330.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.03 Archaeplastida
LOC_Os10g21268.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.39 Archaeplastida
LOC_Os11g32770.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.08 Archaeplastida
LOC_Os12g10580.1 No alias component psRPS15 of small ribosomal subunit proteome 0.37 Archaeplastida
MA_103636g0010 No alias Ribulose bisphosphate carboxylase large chain... 0.02 Archaeplastida
Mp3g01300.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Smo137874 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.19 Archaeplastida
Solyc00g500063.1.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.51 Archaeplastida
Solyc07g021200.1.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.37 Archaeplastida
Solyc12g062540.3.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.02 Archaeplastida
Solyc12g062550.1.1 No alias Ribulose bisphosphate carboxylase large chain OS=Solanum... 0.04 Archaeplastida
Solyc12g062560.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.06 Archaeplastida
Zm00001e002755_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.05 Archaeplastida
Zm00001e010392_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e010393_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e031080_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.13 Archaeplastida
Zm00001e042029_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.17 Archaeplastida
Zm00001e042051_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.18 Archaeplastida
Zm00001e042083_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.22 Archaeplastida
Zm00001e042095_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.2 Archaeplastida
Zm00001e042121_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e042148_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e042351_P001 No alias no hits & (original description: none) 0.15 Archaeplastida
Zm00001e042403_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.2 Archaeplastida
Zm00001e042465_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.07 Archaeplastida
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.12 LandPlants
AMTR_s00012p00184400 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain... 0.12 LandPlants
AMTR_s00606p00006850 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.12 LandPlants
GSVIVT01013856001 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.08 LandPlants
GSVIVT01022403001 No alias Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.07 LandPlants
Gb_07644 No alias Ribulose bisphosphate carboxylase large chain... 0.17 LandPlants
Gb_15502 No alias Ribulose bisphosphate carboxylase large chain... 0.17 LandPlants
Gb_18620 No alias Ribulose bisphosphate carboxylase large chain... 0.03 LandPlants
Gb_25934 No alias Ribulose bisphosphate carboxylase large chain... 0.02 LandPlants
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.09 LandPlants
Gb_37464 No alias Ribulose bisphosphate carboxylase large chain... 0.17 LandPlants
LOC_Os01g58020.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.28 LandPlants
LOC_Os05g35330.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.03 LandPlants
LOC_Os10g21268.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.38 LandPlants
LOC_Os11g32770.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.08 LandPlants
LOC_Os12g10580.1 No alias component psRPS15 of small ribosomal subunit proteome 0.36 LandPlants
MA_103636g0010 No alias Ribulose bisphosphate carboxylase large chain... 0.02 LandPlants
Mp3g01300.1 No alias no hits & (original description: none) 0.09 LandPlants
Smo137874 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.19 LandPlants
Solyc00g500063.1.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.5 LandPlants
Solyc07g021200.1.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.35 LandPlants
Solyc12g062540.3.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.02 LandPlants
Solyc12g062550.1.1 No alias Ribulose bisphosphate carboxylase large chain OS=Solanum... 0.04 LandPlants
Solyc12g062560.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.07 LandPlants
Zm00001e002755_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.05 LandPlants
Zm00001e003902_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.02 LandPlants
Zm00001e010392_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e010393_P001 No alias no hits & (original description: none) 0.05 LandPlants
Zm00001e031080_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.13 LandPlants
Zm00001e042029_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.17 LandPlants
Zm00001e042051_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.18 LandPlants
Zm00001e042083_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.21 LandPlants
Zm00001e042095_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.2 LandPlants
Zm00001e042121_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e042148_P001 No alias no hits & (original description: none) 0.04 LandPlants
Zm00001e042351_P001 No alias no hits & (original description: none) 0.15 LandPlants
Zm00001e042403_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.2 LandPlants
Zm00001e042465_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.07 LandPlants
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.13 SeedPlants
AMTR_s00012p00184400 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain... 0.13 SeedPlants
AMTR_s00606p00006850 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.13 SeedPlants
GSVIVT01013856001 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.09 SeedPlants
GSVIVT01022403001 No alias Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.07 SeedPlants
Gb_07644 No alias Ribulose bisphosphate carboxylase large chain... 0.18 SeedPlants
Gb_15502 No alias Ribulose bisphosphate carboxylase large chain... 0.18 SeedPlants
Gb_18620 No alias Ribulose bisphosphate carboxylase large chain... 0.03 SeedPlants
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.1 SeedPlants
Gb_37464 No alias Ribulose bisphosphate carboxylase large chain... 0.18 SeedPlants
LOC_Os01g58020.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.27 SeedPlants
LOC_Os05g35330.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.03 SeedPlants
LOC_Os10g21268.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.38 SeedPlants
LOC_Os11g32770.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.1 SeedPlants
LOC_Os12g10580.1 No alias component psRPS15 of small ribosomal subunit proteome 0.37 SeedPlants
MA_103636g0010 No alias Ribulose bisphosphate carboxylase large chain... 0.01 SeedPlants
Solyc00g500063.1.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.46 SeedPlants
Solyc12g062550.1.1 No alias Ribulose bisphosphate carboxylase large chain OS=Solanum... 0.04 SeedPlants
Zm00001e002755_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.05 SeedPlants
Zm00001e010392_P001 No alias no hits & (original description: none) 0.03 SeedPlants
Zm00001e010393_P001 No alias no hits & (original description: none) 0.05 SeedPlants
Zm00001e031080_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.14 SeedPlants
Zm00001e036792_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.02 SeedPlants
Zm00001e042029_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.18 SeedPlants
Zm00001e042051_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.19 SeedPlants
Zm00001e042083_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.22 SeedPlants
Zm00001e042095_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.21 SeedPlants
Zm00001e042121_P001 No alias no hits & (original description: none) 0.01 SeedPlants
Zm00001e042148_P001 No alias no hits & (original description: none) 0.04 SeedPlants
Zm00001e042351_P001 No alias no hits & (original description: none) 0.14 SeedPlants
Zm00001e042403_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.21 SeedPlants
Zm00001e042465_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.07 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IDA Interproscan
BP GO:0006091 generation of precursor metabolites and energy RCA Interproscan
BP GO:0006354 DNA-templated transcription, elongation RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009507 chloroplast TAS Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
CC GO:0009579 thylakoid IDA Interproscan
BP GO:0009737 response to abscisic acid IEP Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
CC GO:0010287 plastoglobule IDA Interproscan
BP GO:0015977 carbon fixation TAS Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
CC GO:0016020 membrane IDA Interproscan
MF GO:0016984 ribulose-bisphosphate carboxylase activity TAS Interproscan
BP GO:0018119 peptidyl-cysteine S-nitrosylation IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
CC GO:0048046 apoplast IDA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR017443 RuBisCO_lsu_fd_N 24 144
IPR000685 RuBisCO_lsu_C 154 462
No external refs found!