ATCG00380 (RPS4)

Aliases : RPS4

Description : chloroplast ribosomal protein S4

Gene families : OG_01_0003680 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003680_tree ,
OG_02_0003482 (LandPlants) Phylogenetic Tree(s): OG_02_0003482_tree ,
OG_03_0002285 (SeedPlants) Phylogenetic Tree(s): OG_03_0002285_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00380
Cluster	HCCA: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01021975001	No alias	Protein biosynthesis.organelle translation...	0.1	Archaeplastida
Gb_06832	No alias	component psRPS4 of small ribosomal subunit proteome	0.22	Archaeplastida
Gb_11360	No alias	component psRPS4 of small ribosomal subunit proteome	0.17	Archaeplastida
LOC_Os04g16738.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.5	Archaeplastida
LOC_Os04g16764.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.5	Archaeplastida
LOC_Os10g38214.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.5	Archaeplastida
Solyc00g500060.1.1	No alias	no hits & (original description: none)	0.44	Archaeplastida
Solyc00g500143.1.1	No alias	no hits & (original description: none)	0.06	Archaeplastida
Solyc00g500212.1.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.13	Archaeplastida
Solyc09g015330.2.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc11g022610.1.1	No alias	30S ribosomal protein S4, chloroplastic OS=Solanum...	0.05	Archaeplastida
Zm00001e003895_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	Archaeplastida
Zm00001e003897_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.04	Archaeplastida
Zm00001e003908_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	Archaeplastida
Zm00001e013560_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.09	Archaeplastida
Zm00001e042033_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	Archaeplastida
Zm00001e042054_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	Archaeplastida
Zm00001e042069_P001	No alias	No annotation	0.08	Archaeplastida
Zm00001e042078_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	Archaeplastida
Zm00001e042098_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	Archaeplastida
Zm00001e042353_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	Archaeplastida
GSVIVT01021975001	No alias	Protein biosynthesis.organelle translation...	0.09	LandPlants
Gb_06832	No alias	component psRPS4 of small ribosomal subunit proteome	0.22	LandPlants
Gb_11360	No alias	component psRPS4 of small ribosomal subunit proteome	0.17	LandPlants
LOC_Os04g16738.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.51	LandPlants
LOC_Os04g16764.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.51	LandPlants
LOC_Os10g38214.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.51	LandPlants
Solyc00g500060.1.1	No alias	no hits & (original description: none)	0.42	LandPlants
Solyc00g500143.1.1	No alias	no hits & (original description: none)	0.06	LandPlants
Solyc00g500212.1.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.11	LandPlants
Solyc09g015330.2.1	No alias	no hits & (original description: none)	0.02	LandPlants
Zm00001e003895_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.2	LandPlants
Zm00001e003897_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.04	LandPlants
Zm00001e003908_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.2	LandPlants
Zm00001e013560_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.09	LandPlants
Zm00001e042033_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.2	LandPlants
Zm00001e042054_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.2	LandPlants
Zm00001e042069_P001	No alias	No annotation	0.07	LandPlants
Zm00001e042078_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.2	LandPlants
Zm00001e042098_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.2	LandPlants
Zm00001e042353_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.2	LandPlants
GSVIVT01021975001	No alias	Protein biosynthesis.organelle translation...	0.09	SeedPlants
Gb_06832	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	SeedPlants
Gb_11360	No alias	component psRPS4 of small ribosomal subunit proteome	0.17	SeedPlants
LOC_Os04g16738.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.51	SeedPlants
LOC_Os04g16764.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.51	SeedPlants
LOC_Os10g38214.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.51	SeedPlants
Solyc00g500060.1.1	No alias	no hits & (original description: none)	0.39	SeedPlants
Solyc00g500143.1.1	No alias	no hits & (original description: none)	0.05	SeedPlants
Solyc00g500212.1.1	No alias	component psRPS4 of small ribosomal subunit proteome	0.09	SeedPlants
Solyc09g015330.2.1	No alias	no hits & (original description: none)	0.02	SeedPlants
Zm00001e003895_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	SeedPlants
Zm00001e003897_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.03	SeedPlants
Zm00001e003908_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	SeedPlants
Zm00001e013560_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.08	SeedPlants
Zm00001e042033_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	SeedPlants
Zm00001e042054_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	SeedPlants
Zm00001e042069_P001	No alias	No annotation	0.07	SeedPlants
Zm00001e042078_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	SeedPlants
Zm00001e042098_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	SeedPlants
Zm00001e042353_P001	No alias	component psRPS4 of small ribosomal subunit proteome	0.21	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0000312	plastid small ribosomal subunit	TAS	Interproscan
CC	GO:0000314	organellar small ribosomal subunit	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	TAS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription, elongation	RCA	Interproscan
BP	GO:0006412	translation	TAS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002942	S4_RNA-bd	89	136
IPR001912	Ribosomal_S4/S9_N	3	88

External Links

No external refs found!

ATCG00380 (RPS4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation