ATCG00380 (RPS4)


Aliases : RPS4

Description : chloroplast ribosomal protein S4


Gene families : OG_01_0003680 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003680_tree ,
OG_02_0003482 (LandPlants) Phylogenetic Tree(s): OG_02_0003482_tree ,
OG_03_0002285 (SeedPlants) Phylogenetic Tree(s): OG_03_0002285_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATCG00380
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01021975001 No alias Protein biosynthesis.organelle translation... 0.1 Archaeplastida
Gb_06832 No alias component psRPS4 of small ribosomal subunit proteome 0.22 Archaeplastida
Gb_11360 No alias component psRPS4 of small ribosomal subunit proteome 0.17 Archaeplastida
LOC_Os04g16738.1 No alias component psRPS4 of small ribosomal subunit proteome 0.5 Archaeplastida
LOC_Os04g16764.1 No alias component psRPS4 of small ribosomal subunit proteome 0.5 Archaeplastida
LOC_Os10g38214.1 No alias component psRPS4 of small ribosomal subunit proteome 0.5 Archaeplastida
Solyc00g500060.1.1 No alias no hits & (original description: none) 0.44 Archaeplastida
Solyc00g500143.1.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc00g500212.1.1 No alias component psRPS4 of small ribosomal subunit proteome 0.13 Archaeplastida
Solyc09g015330.2.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc11g022610.1.1 No alias 30S ribosomal protein S4, chloroplastic OS=Solanum... 0.05 Archaeplastida
Zm00001e003895_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 Archaeplastida
Zm00001e003897_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.04 Archaeplastida
Zm00001e003908_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 Archaeplastida
Zm00001e013560_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
Zm00001e042033_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 Archaeplastida
Zm00001e042054_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 Archaeplastida
Zm00001e042069_P001 No alias No annotation 0.08 Archaeplastida
Zm00001e042078_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 Archaeplastida
Zm00001e042098_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 Archaeplastida
Zm00001e042353_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 Archaeplastida
GSVIVT01021975001 No alias Protein biosynthesis.organelle translation... 0.09 LandPlants
Gb_06832 No alias component psRPS4 of small ribosomal subunit proteome 0.22 LandPlants
Gb_11360 No alias component psRPS4 of small ribosomal subunit proteome 0.17 LandPlants
LOC_Os04g16738.1 No alias component psRPS4 of small ribosomal subunit proteome 0.51 LandPlants
LOC_Os04g16764.1 No alias component psRPS4 of small ribosomal subunit proteome 0.51 LandPlants
LOC_Os10g38214.1 No alias component psRPS4 of small ribosomal subunit proteome 0.51 LandPlants
Solyc00g500060.1.1 No alias no hits & (original description: none) 0.42 LandPlants
Solyc00g500143.1.1 No alias no hits & (original description: none) 0.06 LandPlants
Solyc00g500212.1.1 No alias component psRPS4 of small ribosomal subunit proteome 0.11 LandPlants
Solyc09g015330.2.1 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e003895_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.2 LandPlants
Zm00001e003897_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.04 LandPlants
Zm00001e003908_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.2 LandPlants
Zm00001e013560_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.09 LandPlants
Zm00001e042033_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.2 LandPlants
Zm00001e042054_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.2 LandPlants
Zm00001e042069_P001 No alias No annotation 0.07 LandPlants
Zm00001e042078_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.2 LandPlants
Zm00001e042098_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.2 LandPlants
Zm00001e042353_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.2 LandPlants
GSVIVT01021975001 No alias Protein biosynthesis.organelle translation... 0.09 SeedPlants
Gb_06832 No alias component psRPS4 of small ribosomal subunit proteome 0.21 SeedPlants
Gb_11360 No alias component psRPS4 of small ribosomal subunit proteome 0.17 SeedPlants
LOC_Os04g16738.1 No alias component psRPS4 of small ribosomal subunit proteome 0.51 SeedPlants
LOC_Os04g16764.1 No alias component psRPS4 of small ribosomal subunit proteome 0.51 SeedPlants
LOC_Os10g38214.1 No alias component psRPS4 of small ribosomal subunit proteome 0.51 SeedPlants
Solyc00g500060.1.1 No alias no hits & (original description: none) 0.39 SeedPlants
Solyc00g500143.1.1 No alias no hits & (original description: none) 0.05 SeedPlants
Solyc00g500212.1.1 No alias component psRPS4 of small ribosomal subunit proteome 0.09 SeedPlants
Solyc09g015330.2.1 No alias no hits & (original description: none) 0.02 SeedPlants
Zm00001e003895_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 SeedPlants
Zm00001e003897_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.03 SeedPlants
Zm00001e003908_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 SeedPlants
Zm00001e013560_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.08 SeedPlants
Zm00001e042033_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 SeedPlants
Zm00001e042054_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 SeedPlants
Zm00001e042069_P001 No alias No annotation 0.07 SeedPlants
Zm00001e042078_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 SeedPlants
Zm00001e042098_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 SeedPlants
Zm00001e042353_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.21 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000312 plastid small ribosomal subunit TAS Interproscan
MF GO:0003735 structural constituent of ribosome TAS Interproscan
BP GO:0006091 generation of precursor metabolites and energy RCA Interproscan
BP GO:0006354 DNA-templated transcription, elongation RCA Interproscan
BP GO:0006412 translation TAS Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
CC GO:0016020 membrane IDA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 89 136
IPR001912 Ribosomal_S4/S9_N 3 88
No external refs found!