ATCG00280 (PSBC)


Aliases : PSBC

Description : photosystem II reaction center protein C


Gene families : OG_01_0001539 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001539_tree ,
OG_02_0001136 (LandPlants) Phylogenetic Tree(s): OG_02_0001136_tree ,
OG_03_0000942 (SeedPlants) Phylogenetic Tree(s): OG_03_0000942_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATCG00280
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01196p00010070 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein OS=Carica papaya 0.12 Archaeplastida
AMTR_s04036p00005710 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein... 0.12 Archaeplastida
GSVIVT01006662001 No alias Photosystem II CP43 reaction center protein OS=Platanus... 0.1 Archaeplastida
GSVIVT01027074001 No alias No description available 0.06 Archaeplastida
Gb_06826 No alias Photosystem II CP43 reaction center protein OS=Cycas... 0.18 Archaeplastida
Gb_09041 No alias component PsbD/D2 of PS-II reaction center complex 0.08 Archaeplastida
Gb_11943 No alias Photosystem II CP43 reaction center protein... 0.17 Archaeplastida
Gb_19153 No alias Photosystem II CP43 reaction center protein... 0.18 Archaeplastida
Gb_19166 No alias Photosystem II CP43 reaction center protein... 0.04 Archaeplastida
Gb_22672 No alias Photosystem II CP43 reaction center protein... 0.17 Archaeplastida
LOC_Os02g24632.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.37 Archaeplastida
LOC_Os04g16874.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.41 Archaeplastida
LOC_Os10g21212.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.31 Archaeplastida
Smo137689 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.21 Archaeplastida
Solyc00g230070.1.1 No alias Photosystem II CP43 reaction center protein OS=Lepidium... 0.03 Archaeplastida
Solyc00g500054.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.4 Archaeplastida
Solyc00g500136.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.4 Archaeplastida
Solyc00g500206.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.4 Archaeplastida
Solyc05g041230.1.1 No alias Photosystem II CP43 reaction center protein... 0.01 Archaeplastida
Solyc07g009000.1.1 No alias Photosystem II CP43 reaction center protein OS=Coffea... 0.03 Archaeplastida
Solyc12g027550.2.1 No alias Photosystem II CP43 reaction center protein OS=Nicotiana... 0.03 Archaeplastida
Solyc12g038080.1.1 No alias Photosystem II CP43 reaction center protein OS=Nicotiana... 0.05 Archaeplastida
Zm00001e042042_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.16 Archaeplastida
Zm00001e042108_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e042157_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.1 Archaeplastida
Zm00001e042172_P001 No alias no hits & (original description: none) 0.15 Archaeplastida
Zm00001e042269_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.1 Archaeplastida
AMTR_s01196p00010070 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein OS=Carica papaya 0.12 LandPlants
AMTR_s04036p00005710 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein... 0.12 LandPlants
GSVIVT01006662001 No alias Photosystem II CP43 reaction center protein OS=Platanus... 0.09 LandPlants
GSVIVT01027074001 No alias No description available 0.05 LandPlants
Gb_06826 No alias Photosystem II CP43 reaction center protein OS=Cycas... 0.17 LandPlants
Gb_09041 No alias component PsbD/D2 of PS-II reaction center complex 0.08 LandPlants
Gb_11943 No alias Photosystem II CP43 reaction center protein... 0.17 LandPlants
Gb_19153 No alias Photosystem II CP43 reaction center protein... 0.18 LandPlants
Gb_19166 No alias Photosystem II CP43 reaction center protein... 0.04 LandPlants
Gb_22672 No alias Photosystem II CP43 reaction center protein... 0.17 LandPlants
LOC_Os02g24632.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.36 LandPlants
LOC_Os04g16874.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.41 LandPlants
LOC_Os10g21212.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.3 LandPlants
Smo137689 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.2 LandPlants
Solyc00g230070.1.1 No alias Photosystem II CP43 reaction center protein OS=Lepidium... 0.03 LandPlants
Solyc00g500054.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.39 LandPlants
Solyc00g500136.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.39 LandPlants
Solyc00g500206.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.39 LandPlants
Solyc05g041230.1.1 No alias Photosystem II CP43 reaction center protein... 0.01 LandPlants
Solyc07g009000.1.1 No alias Photosystem II CP43 reaction center protein OS=Coffea... 0.03 LandPlants
Solyc12g027550.2.1 No alias Photosystem II CP43 reaction center protein OS=Nicotiana... 0.01 LandPlants
Solyc12g038080.1.1 No alias Photosystem II CP43 reaction center protein OS=Nicotiana... 0.05 LandPlants
Zm00001e042042_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.15 LandPlants
Zm00001e042108_P001 No alias no hits & (original description: none) 0.04 LandPlants
Zm00001e042157_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.1 LandPlants
Zm00001e042172_P001 No alias no hits & (original description: none) 0.15 LandPlants
Zm00001e042269_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.1 LandPlants
AMTR_s01196p00010070 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein OS=Carica papaya 0.12 SeedPlants
AMTR_s04036p00005710 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein... 0.12 SeedPlants
GSVIVT01006662001 No alias Photosystem II CP43 reaction center protein OS=Platanus... 0.09 SeedPlants
GSVIVT01027074001 No alias No description available 0.05 SeedPlants
Gb_06826 No alias Photosystem II CP43 reaction center protein OS=Cycas... 0.18 SeedPlants
Gb_11943 No alias Photosystem II CP43 reaction center protein... 0.17 SeedPlants
Gb_19153 No alias Photosystem II CP43 reaction center protein... 0.18 SeedPlants
Gb_19166 No alias Photosystem II CP43 reaction center protein... 0.07 SeedPlants
Gb_22672 No alias Photosystem II CP43 reaction center protein... 0.17 SeedPlants
LOC_Os02g24632.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.36 SeedPlants
LOC_Os04g16874.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.41 SeedPlants
LOC_Os10g21212.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.31 SeedPlants
Solyc00g230070.1.1 No alias Photosystem II CP43 reaction center protein OS=Lepidium... 0.03 SeedPlants
Solyc00g500054.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.37 SeedPlants
Solyc00g500136.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.37 SeedPlants
Solyc00g500206.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.38 SeedPlants
Solyc05g041230.1.1 No alias Photosystem II CP43 reaction center protein... 0.01 SeedPlants
Solyc07g009000.1.1 No alias Photosystem II CP43 reaction center protein OS=Coffea... 0.01 SeedPlants
Solyc12g027550.2.1 No alias Photosystem II CP43 reaction center protein OS=Nicotiana... 0.01 SeedPlants
Solyc12g038080.1.1 No alias Photosystem II CP43 reaction center protein OS=Nicotiana... 0.05 SeedPlants
Zm00001e042042_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.16 SeedPlants
Zm00001e042108_P001 No alias no hits & (original description: none) 0.03 SeedPlants
Zm00001e042157_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.11 SeedPlants
Zm00001e042172_P001 No alias no hits & (original description: none) 0.16 SeedPlants
Zm00001e042269_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.11 SeedPlants

Type GO Term Name Evidence Source
BP GO:0006091 generation of precursor metabolites and energy RCA Interproscan
BP GO:0006354 DNA-templated transcription, elongation RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009533 chloroplast stromal thylakoid IDA Interproscan
CC GO:0009534 chloroplast thylakoid IDA Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
CC GO:0009539 photosystem II reaction center TAS Interproscan
CC GO:0009579 thylakoid IDA Interproscan
BP GO:0010207 photosystem II assembly RCA Interproscan
CC GO:0010287 plastoglobule IDA Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
CC GO:0016020 membrane IDA Interproscan
MF GO:0016168 chlorophyll binding TAS Interproscan
BP GO:0019684 photosynthesis, light reaction RCA Interproscan
BP GO:0019684 photosynthesis, light reaction TAS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000932 PS_antenna-like 31 469
No external refs found!