ATCG00180 (RPOC1)


Aliases : RPOC1

Description : DNA-directed RNA polymerase family protein


Gene families : OG_01_0000707 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000707_tree ,
OG_02_0002942 (LandPlants) Phylogenetic Tree(s): OG_02_0002942_tree ,
OG_03_0002537 (SeedPlants) Phylogenetic Tree(s): OG_03_0002537_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATCG00180
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00130230 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.12 Archaeplastida
AMTR_s00390p00012910 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.12 Archaeplastida
GSVIVT01017094001 No alias DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.11 Archaeplastida
GSVIVT01019173001 No alias DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.03 Archaeplastida
GSVIVT01032753001 No alias DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.09 Archaeplastida
Gb_02726 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.05 Archaeplastida
Gb_09031 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.03 Archaeplastida
Gb_09032 No alias DNA-directed RNA polymerase subunit beta OS=Pinus... 0.05 Archaeplastida
Gb_10415 No alias DNA-directed RNA polymerase subunit beta OS=Pinus... 0.04 Archaeplastida
Gb_26285 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.03 Archaeplastida
Gb_39909 No alias RpoC1 core component plastid-encoded RNA polymerase 0.04 Archaeplastida
LOC_Os02g24614.1 No alias RpoC1 core component plastid-encoded RNA polymerase 0.12 Archaeplastida
LOC_Os04g16830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.4 Archaeplastida
Mp1g00060.1 No alias RpoC2 core component plastid-encoded RNA polymerase 0.07 Archaeplastida
Mp4g02290.1 No alias DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.03 Archaeplastida
Mp4g05220.1 No alias No annotation 0.04 Archaeplastida
Mp5g11220.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c19_12990V3.1 No alias DNA-directed RNA polymerase family protein 0.03 Archaeplastida
Pp3c7_4990V3.1 No alias DNA-directed RNA polymerase family protein 0.03 Archaeplastida
Solyc00g500052.1.1 No alias RpoC1 core component plastid-encoded RNA polymerase.... 0.25 Archaeplastida
Solyc00g500135.1.1 No alias RpoC1 core component plastid-encoded RNA polymerase.... 0.25 Archaeplastida
Solyc00g500205.1.1 No alias RpoC1 core component plastid-encoded RNA polymerase.... 0.25 Archaeplastida
Solyc00g500290.1.1 No alias RpoC2 core component plastid-encoded RNA polymerase 0.08 Archaeplastida
Solyc01g017370.2.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.2 Archaeplastida
Solyc01g017470.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.28 Archaeplastida
Solyc01g056840.1.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc08g014390.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.04 Archaeplastida
Solyc11g062110.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.24 Archaeplastida
Solyc12g062563.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc12g062580.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.02 Archaeplastida
Solyc12g096910.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.02 Archaeplastida
Zm00001e042060_P001 No alias RpoC2 core component plastid-encoded RNA polymerase 0.03 Archaeplastida
Zm00001e042169_P001 No alias RpoC2 core component plastid-encoded RNA polymerase 0.03 Archaeplastida
Gb_39909 No alias RpoC1 core component plastid-encoded RNA polymerase 0.04 LandPlants
LOC_Os02g24614.1 No alias RpoC1 core component plastid-encoded RNA polymerase 0.13 LandPlants
Mp4g02290.1 No alias DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.04 LandPlants
Mp5g11220.1 No alias no hits & (original description: none) 0.05 LandPlants
Pp3c19_12990V3.1 No alias DNA-directed RNA polymerase family protein 0.04 LandPlants
Solyc01g017370.2.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.19 LandPlants
Solyc01g017470.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.26 LandPlants
Solyc08g014390.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.04 LandPlants
Solyc11g062110.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.22 LandPlants
Solyc12g062563.1.1 No alias no hits & (original description: none) 0.02 LandPlants
Solyc12g062580.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.02 LandPlants
Gb_39909 No alias RpoC1 core component plastid-encoded RNA polymerase 0.04 SeedPlants
LOC_Os02g24614.1 No alias RpoC1 core component plastid-encoded RNA polymerase 0.13 SeedPlants
Solyc01g017370.2.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.17 SeedPlants
Solyc01g017470.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.2 SeedPlants
Solyc08g014390.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.04 SeedPlants
Solyc08g028950.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Cucumis... 0.02 SeedPlants
Solyc12g062563.1.1 No alias no hits & (original description: none) 0.02 SeedPlants
Solyc12g062580.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity TAS Interproscan
BP GO:0006091 generation of precursor metabolites and energy RCA Interproscan
BP GO:0006354 DNA-templated transcription, elongation RCA Interproscan
BP GO:0006354 DNA-templated transcription, elongation TAS Interproscan
CC GO:0009295 nucleoid IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009507 chloroplast TAS Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 430 513
IPR000722 RNA_pol_asu 373 421
IPR007080 RNA_pol_Rpb1_1 8 371
No external refs found!