ATCG00170 (RPOC2)

Aliases : RPOC2

Description : DNA-directed RNA polymerase family protein

Gene families : OG_01_0000707 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000707_tree ,
OG_02_0001017 (LandPlants) Phylogenetic Tree(s): OG_02_0001017_tree ,
OG_03_0000818 (SeedPlants) Phylogenetic Tree(s): OG_03_0000818_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00170
Cluster	HCCA: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00028p00130230	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.12	Archaeplastida
AMTR_s00390p00012910	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.12	Archaeplastida
GSVIVT01017094001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.11	Archaeplastida
GSVIVT01019173001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.04	Archaeplastida
GSVIVT01032753001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.09	Archaeplastida
Gb_02726	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.05	Archaeplastida
Gb_09031	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.03	Archaeplastida
Gb_09032	No alias	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.05	Archaeplastida
Gb_10415	No alias	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.05	Archaeplastida
Gb_26285	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.03	Archaeplastida
Gb_39909	No alias	RpoC1 core component plastid-encoded RNA polymerase	0.04	Archaeplastida
LOC_Os02g24614.1	No alias	RpoC1 core component plastid-encoded RNA polymerase	0.09	Archaeplastida
LOC_Os04g16830.1	No alias	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.37	Archaeplastida
Mp1g00060.1	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.07	Archaeplastida
Mp4g02290.1	No alias	DNA-directed RNA polymerase subunit beta OS=Marchantia...	0.03	Archaeplastida
Mp4g05220.1	No alias	No annotation	0.04	Archaeplastida
Mp5g11220.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Pp3c19_12990V3.1	No alias	DNA-directed RNA polymerase family protein	0.03	Archaeplastida
Pp3c7_4990V3.1	No alias	DNA-directed RNA polymerase family protein	0.03	Archaeplastida
Solyc00g500052.1.1	No alias	RpoC1 core component plastid-encoded RNA polymerase....	0.26	Archaeplastida
Solyc00g500135.1.1	No alias	RpoC1 core component plastid-encoded RNA polymerase....	0.26	Archaeplastida
Solyc00g500205.1.1	No alias	RpoC1 core component plastid-encoded RNA polymerase....	0.26	Archaeplastida
Solyc00g500290.1.1	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.08	Archaeplastida
Solyc01g017370.2.1	No alias	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.21	Archaeplastida
Solyc01g017470.3.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.29	Archaeplastida
Solyc01g056840.1.1	No alias	no hits & (original description: none)	0.07	Archaeplastida
Solyc08g014390.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.04	Archaeplastida
Solyc11g062110.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.25	Archaeplastida
Solyc12g062563.1.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc12g062580.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.02	Archaeplastida
Solyc12g096910.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.02	Archaeplastida
Zm00001e042060_P001	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.03	Archaeplastida
Zm00001e042169_P001	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.03	Archaeplastida
AMTR_s00028p00130230	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.12	LandPlants
AMTR_s00390p00012910	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.12	LandPlants
GSVIVT01017094001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.11	LandPlants
GSVIVT01019173001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.03	LandPlants
GSVIVT01032753001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.09	LandPlants
Gb_02726	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.05	LandPlants
Gb_09031	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.03	LandPlants
Gb_09032	No alias	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.05	LandPlants
Gb_10415	No alias	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.03	LandPlants
Gb_26285	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.03	LandPlants
LOC_Os04g16830.1	No alias	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.38	LandPlants
Mp1g00060.1	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.07	LandPlants
Mp4g05220.1	No alias	No annotation	0.04	LandPlants
Pp3c7_4990V3.1	No alias	DNA-directed RNA polymerase family protein	0.04	LandPlants
Solyc00g500052.1.1	No alias	RpoC1 core component plastid-encoded RNA polymerase....	0.24	LandPlants
Solyc00g500135.1.1	No alias	RpoC1 core component plastid-encoded RNA polymerase....	0.24	LandPlants
Solyc00g500205.1.1	No alias	RpoC1 core component plastid-encoded RNA polymerase....	0.24	LandPlants
Solyc00g500290.1.1	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.1	LandPlants
Solyc01g056840.1.1	No alias	no hits & (original description: none)	0.05	LandPlants
Solyc12g096910.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.02	LandPlants
Zm00001e042060_P001	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.03	LandPlants
Zm00001e042169_P001	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.03	LandPlants
AMTR_s00028p00130230	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.13	SeedPlants
AMTR_s00390p00012910	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.13	SeedPlants
GSVIVT01017094001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.11	SeedPlants
GSVIVT01019173001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.03	SeedPlants
GSVIVT01032753001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.09	SeedPlants
GSVIVT01034287001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.06	SeedPlants
Gb_02726	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.05	SeedPlants
Gb_09031	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.03	SeedPlants
Gb_09032	No alias	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.05	SeedPlants
Gb_09773	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.02	SeedPlants
Gb_10415	No alias	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.03	SeedPlants
Gb_26285	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.03	SeedPlants
LOC_Os04g16830.1	No alias	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.39	SeedPlants
Solyc00g500052.1.1	No alias	RpoC1 core component plastid-encoded RNA polymerase....	0.2	SeedPlants
Solyc00g500135.1.1	No alias	RpoC1 core component plastid-encoded RNA polymerase....	0.2	SeedPlants
Solyc00g500205.1.1	No alias	RpoC1 core component plastid-encoded RNA polymerase....	0.2	SeedPlants
Solyc00g500290.1.1	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.08	SeedPlants
Solyc01g056840.1.1	No alias	no hits & (original description: none)	0.04	SeedPlants
Solyc03g095380.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.01	SeedPlants
Solyc10g011720.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.02	SeedPlants
Solyc11g007260.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.01	SeedPlants
Solyc12g096910.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.02	SeedPlants
Zm00001e042060_P001	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.03	SeedPlants
Zm00001e042169_P001	No alias	RpoC2 core component plastid-encoded RNA polymerase	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	TAS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription, elongation	RCA	Interproscan
BP	GO:0006354	DNA-templated transcription, elongation	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009295	nucleoid	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009507	chloroplast	TAS	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	RCA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	1188	1275
IPR007081	RNA_pol_Rpb1_5	172	367
IPR007083	RNA_pol_Rpb1_4	95	157

External Links

No external refs found!

ATCG00170 (RPOC2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation