ATCG00050 (RPS16)


Aliases : RPS16

Description : ribosomal protein S16


Gene families : OG_01_0001415 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001415_tree ,
OG_02_0015454 (LandPlants) Phylogenetic Tree(s): OG_02_0015454_tree ,
OG_03_0013704 (SeedPlants) Phylogenetic Tree(s): OG_03_0013704_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATCG00050
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
LOC_Os10g21196.1 No alias 30S ribosomal protein S16, chloroplastic OS=Oryza sativa... 0.05 Archaeplastida
Solyc02g011995.1.1 No alias no hits & (original description: none) 0.32 Archaeplastida
LOC_Os10g21196.1 No alias 30S ribosomal protein S16, chloroplastic OS=Oryza sativa... 0.05 LandPlants
Solyc02g011995.1.1 No alias no hits & (original description: none) 0.31 LandPlants
LOC_Os10g21196.1 No alias 30S ribosomal protein S16, chloroplastic OS=Oryza sativa... 0.05 SeedPlants
Solyc02g011995.1.1 No alias no hits & (original description: none) 0.26 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000312 plastid small ribosomal subunit TAS Interproscan
MF GO:0003735 structural constituent of ribosome TAS Interproscan
BP GO:0006091 generation of precursor metabolites and energy RCA Interproscan
BP GO:0006354 DNA-templated transcription, elongation RCA Interproscan
BP GO:0006412 translation TAS Interproscan
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
BP GO:0051607 defense response to virus RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000307 Ribosomal_S16 8 64
No external refs found!