AT5G66750 (CHR01, CHR1, CHA1,...)

Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1

Description : chromatin remodeling 1

Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0005519 (LandPlants) Phylogenetic Tree(s): OG_02_0005519_tree ,
OG_03_0005694 (SeedPlants) Phylogenetic Tree(s): OG_03_0005694_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G66750
Cluster	HCCA: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00063470	evm_27.TU.AmTr_v1...	Chromatin organisation.DNA methylation.RNA-independent...	0.05	Archaeplastida
Cpa\|evm.model.tig00000217.25	No alias	Chromatin structure-remodeling complex protein SYD...	0.01	Archaeplastida
Cpa\|evm.model.tig00000350.9	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.01	Archaeplastida
Cre03.g158550	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Archaeplastida
Cre09.g390000	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.02	Archaeplastida
GSVIVT01018979001	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.06	Archaeplastida
Gb_16888	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os03g51230.2	No alias	chromatin remodeling factor (DDM1)	0.02	Archaeplastida
LOC_Os09g27060.1	No alias	chromatin remodeling factor (DDM1)	0.08	Archaeplastida
MA_104034g0010	No alias	chromatin remodeling factor (DDM1)	0.05	Archaeplastida
Mp4g12200.1	No alias	chromatin remodeling factor (DDM1)	0.02	Archaeplastida
Mp8g17660.1	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida
Pp3c17_19520V3.1	No alias	chromatin remodeling 1	0.02	Archaeplastida
Pp3c20_11500V3.1	No alias	chromatin remodeling 5	0.06	Archaeplastida
Smo102612	No alias	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.02	Archaeplastida
Smo102849	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Solyc08g029130.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Archaeplastida
Zm00001e005517_P002	No alias	chromatin remodeling factor (DDM1)	0.04	Archaeplastida
Zm00001e011541_P001	No alias	chromatin remodeling factor (DDM1)	0.04	Archaeplastida
Zm00001e017643_P001	No alias	chromatin remodeling factor (Iswi)	0.02	Archaeplastida
AMTR_s00059p00063470	evm_27.TU.AmTr_v1...	Chromatin organisation.DNA methylation.RNA-independent...	0.05	LandPlants
GSVIVT01018979001	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.05	LandPlants
Gb_16888	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana...	0.04	LandPlants
LOC_Os03g51230.2	No alias	chromatin remodeling factor (DDM1)	0.02	LandPlants
LOC_Os09g27060.1	No alias	chromatin remodeling factor (DDM1)	0.06	LandPlants
MA_104034g0010	No alias	chromatin remodeling factor (DDM1)	0.04	LandPlants
Mp4g12200.1	No alias	chromatin remodeling factor (DDM1)	0.02	LandPlants
Solyc02g085390.4.1	No alias	chromatin remodeling factor (DDM1)	0.02	LandPlants
Zm00001e005517_P002	No alias	chromatin remodeling factor (DDM1)	0.03	LandPlants
Zm00001e011541_P001	No alias	chromatin remodeling factor (DDM1)	0.03	LandPlants
AMTR_s00059p00063470	evm_27.TU.AmTr_v1...	Chromatin organisation.DNA methylation.RNA-independent...	0.05	SeedPlants
GSVIVT01018979001	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.05	SeedPlants
LOC_Os03g51230.2	No alias	chromatin remodeling factor (DDM1)	0.02	SeedPlants
LOC_Os09g27060.1	No alias	chromatin remodeling factor (DDM1)	0.06	SeedPlants
MA_104034g0010	No alias	chromatin remodeling factor (DDM1)	0.04	SeedPlants
Solyc02g085390.4.1	No alias	chromatin remodeling factor (DDM1)	0.02	SeedPlants
Zm00001e005517_P002	No alias	chromatin remodeling factor (DDM1)	0.02	SeedPlants
Zm00001e011541_P001	No alias	chromatin remodeling factor (DDM1)	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IDA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006333	chromatin assembly or disassembly	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006342	chromatin silencing	RCA	Interproscan
BP	GO:0006346	DNA methylation-dependent heterochromatin assembly	IMP	Interproscan
BP	GO:0006346	DNA methylation-dependent heterochromatin assembly	RCA	Interproscan
BP	GO:0006349	regulation of gene expression by genetic imprinting	IMP	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0008283	cell population proliferation	RCA	Interproscan
BP	GO:0009292	genetic transfer	None	Extended
BP	GO:0009294	DNA mediated transformation	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	posttranscriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010638	positive regulation of organelle organization	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016246	RNA interference	RCA	Interproscan
BP	GO:0016310	phosphorylation	None	Extended
BP	GO:0016441	posttranscriptional gene silencing	None	Extended
BP	GO:0016458	gene silencing	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
BP	GO:0016569	covalent chromatin modification	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0016572	histone phosphorylation	RCA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IDA	Interproscan
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0031047	gene silencing by RNA	None	Extended
BP	GO:0031048	heterochromatin assembly by small RNA	RCA	Interproscan
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031057	negative regulation of histone modification	None	Extended
BP	GO:0031058	positive regulation of histone modification	None	Extended
BP	GO:0031060	regulation of histone methylation	None	Extended
BP	GO:0031062	positive regulation of histone methylation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031400	negative regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
BP	GO:0031497	chromatin assembly	None	Extended
BP	GO:0031507	heterochromatin assembly	None	Extended
BP	GO:0032196	transposition	None	Extended
BP	GO:0032197	transposition, RNA-mediated	IMP	Interproscan
BP	GO:0032259	methylation	None	Extended
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0032269	negative regulation of cellular protein metabolic process	None	Extended
BP	GO:0032270	positive regulation of cellular protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	None	Extended
BP	GO:0034401	chromatin organization involved in regulation of transcription	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0035065	regulation of histone acetylation	None	Extended
BP	GO:0035067	negative regulation of histone acetylation	None	Extended
BP	GO:0035194	post-transcriptional gene silencing by RNA	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040029	regulation of gene expression, epigenetic	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044030	regulation of DNA methylation	IMP	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044764	multi-organism cellular process	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0045892	negative regulation of transcription, DNA-templated	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051129	negative regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0051570	regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051574	positive regulation of histone H3-K9 methylation	IMP	Interproscan
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071514	genetic imprinting	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090239	regulation of histone H4 acetylation	None	Extended
BP	GO:0090241	negative regulation of histone H4 acetylation	IMP	Interproscan
BP	GO:0097549	chromatin organization involved in negative regulation of transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901983	regulation of protein acetylation	None	Extended
BP	GO:1901984	negative regulation of protein acetylation	None	Extended
BP	GO:1902275	regulation of chromatin organization	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905268	negative regulation of chromatin organization	None	Extended
BP	GO:1905269	positive regulation of chromatin organization	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000756	regulation of peptidyl-lysine acetylation	None	Extended
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended
BP	GO:2001252	positive regulation of chromosome organization	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	527	638
IPR000330	SNF2_dom	214	502

External Links

No external refs found!

AT5G66750 (CHR01, CHR1, CHA1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation