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  5. Pir_g63193

Pir_g63193 (RUXF)


Aliases : RUXF

Description : component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex & original description: none


Gene families : OG0002787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g63193

Target Alias Description ECC score Gene Family Method Actions
AT3G59810 No alias Small nuclear ribonucleoprotein family protein 0.03 OrthoFinder output from all 47 species
Adi_g129920 No alias component *(LSm6) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Aop_g25403 No alias component *(LSm6) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029874 No alias component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Ceric.27G002400.1 RUXF, Ceric.27G002400 component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001355.5 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Cre05.g241300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
GSVIVT01038197001 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Smo268399 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 33 95
No external refs found!