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  5. Pir_g62122

Pir_g62122 (LOS1)


Aliases : LOS1

Description : mRNA-translocation factor *(eEF2)) & original description: none


Gene families : OG0001393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001393_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g62122

Target Alias Description ECC score Gene Family Method Actions
Aop_g13248 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70105 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g03465 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g23642 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g20190.1 LOS1 mRNA-translocation factor (eEF2) 0.03 OrthoFinder output from all 47 species
Mp2g20200.1 LOS1 mRNA-translocation factor (eEF2) 0.03 OrthoFinder output from all 47 species
Solyc08g062920.3.1 LOS1, Solyc08g062920 mRNA-translocation factor (eEF2) 0.05 OrthoFinder output from all 47 species
Spa_g26568 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004161 EFTu-like_2 395 461
IPR041095 EFG_II 487 548
IPR000795 T_Tr_GTP-bd_dom 18 344
IPR005517 Transl_elong_EFG/EF2_IV 604 720
IPR000640 EFG_V-like 724 810
No external refs found!