AT5G63950 (CHR24)

Aliases : CHR24

Description : chromatin remodeling 24

Gene families : OG_01_0004952 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004952_tree ,
OG_02_0005405 (LandPlants) Phylogenetic Tree(s): OG_02_0005405_tree ,
OG_03_0005202 (SeedPlants) Phylogenetic Tree(s): OG_03_0005202_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G63950
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000441.21	No alias	Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cpa\|evm.model.tig00001292.5	No alias	Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01026450001	No alias	Chromatin organisation.chromatin remodeling...	0.09	Archaeplastida
Gb_17075	No alias	chromatin remodeling factor (ERCC6)	0.06	Archaeplastida
LOC_Os04g59624.2	No alias	chromatin remodeling factor (ERCC6)	0.04	Archaeplastida
MA_18372g0010	No alias	Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Mp1g29760.1	No alias	chromatin remodeling factor (ERCC6)	0.05	Archaeplastida
Pp3c14_20620V3.1	No alias	chromatin remodeling 24	0.03	Archaeplastida
Pp3c2_11030V3.1	No alias	chromatin remodeling 24	0.05	Archaeplastida
Solyc01g068280.3.1	No alias	chromatin remodeling factor (ERCC6)	0.08	Archaeplastida
Zm00001e007521_P001	No alias	chromatin remodeling factor (ERCC6)	0.08	Archaeplastida
GSVIVT01026450001	No alias	Chromatin organisation.chromatin remodeling...	0.09	LandPlants
Gb_17075	No alias	chromatin remodeling factor (ERCC6)	0.06	LandPlants
LOC_Os04g59624.2	No alias	chromatin remodeling factor (ERCC6)	0.03	LandPlants
MA_18372g0010	No alias	Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana...	0.03	LandPlants
Mp1g29760.1	No alias	chromatin remodeling factor (ERCC6)	0.04	LandPlants
Pp3c2_11030V3.1	No alias	chromatin remodeling 24	0.03	LandPlants
Solyc01g068280.3.1	No alias	chromatin remodeling factor (ERCC6)	0.08	LandPlants
Zm00001e007521_P001	No alias	chromatin remodeling factor (ERCC6)	0.08	LandPlants
GSVIVT01026450001	No alias	Chromatin organisation.chromatin remodeling...	0.09	SeedPlants
Gb_17075	No alias	chromatin remodeling factor (ERCC6)	0.05	SeedPlants
LOC_Os04g59624.2	No alias	chromatin remodeling factor (ERCC6)	0.03	SeedPlants
MA_18372g0010	No alias	Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana...	0.03	SeedPlants
Solyc01g068280.3.1	No alias	chromatin remodeling factor (ERCC6)	0.08	SeedPlants
Zm00001e007521_P001	No alias	chromatin remodeling factor (ERCC6)	0.08	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006270	DNA replication initiation	RCA	Interproscan
BP	GO:0006275	regulation of DNA replication	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008283	cell population proliferation	RCA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009887	animal organ morphogenesis	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010016	shoot system morphogenesis	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	RCA	Interproscan
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0048439	flower morphogenesis	RCA	Interproscan
BP	GO:0048519	negative regulation of biological process	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	RCA	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	733	845
IPR000330	SNF2_dom	390	680

External Links

No external refs found!

AT5G63950 (CHR24)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation