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  5. Pir_g60924

Pir_g60924 (TPR16)


Aliases : TPR16

Description : not classified & original description: none


Gene families : OG0001935 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001935_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g60924

Target Alias Description ECC score Gene Family Method Actions
Als_g04505 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre02.g108800 TPR16 No description available 0.04 OrthoFinder output from all 47 species
Dac_g06726 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12352 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_07120 TPR16 TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os05g31056.1 TPR16, LOC_Os05g31056 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010692 TPR16 not classified & original description: CDS=84-4754 0.02 OrthoFinder output from all 47 species
Spa_g30890 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09929 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026765_P001 Zm00001e026765 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 1816 1899
No external refs found!