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  5. Pir_g60863

Pir_g60863 (PRP39)


Aliases : PRP39

Description : pre-mRNA-processing protein *(PRP39) & original description: none


Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g60863

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00226980 PRP39,... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00179p00033790 AT PRP39-2,... No description available 0.03 OrthoFinder output from all 47 species
Adi_g019406 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g061192 PRP39 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087387 AT PRP39-2, PRP39-2 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12647 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g25483 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g73033 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G096600.1 PRP39, Ceric.04G096600 pre-mRNA-processing protein *(PRP39) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020911.47 PRP39 No description available 0.01 OrthoFinder output from all 47 species
Cre16.g670300 PRP39 No description available 0.02 OrthoFinder output from all 47 species
Dac_g40489 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15145 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g11777 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.05 OrthoFinder output from all 47 species
Gb_23802 PRP39 pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species
Lfl_g19659 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
MA_6626g0010 PRP39 pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species
Ppi_g29159 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18657 No alias pre-mRNA-processing protein *(PRP39) & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g50656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000702_P004 PRP39, Zm00001e000702 pre-mRNA-processing protein (PRP39) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR008847 Suf 149 307
No external refs found!