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  5. Pir_g60712

Pir_g60712


Description : SMARCI component *(BRD) of SWI/SNF chromatin remodeling complex & original description: none


Gene families : OG0001292 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001292_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g60712

Target Alias Description ECC score Gene Family Method Actions
AT1G20670 No alias DNA-binding bromodomain-containing protein 0.03 OrthoFinder output from all 47 species
AT1G76380 No alias DNA-binding bromodomain-containing protein 0.03 OrthoFinder output from all 47 species
Ala_g08601 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Als_g08054 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g57133 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Aspi01Gene72686.t1 Aspi01Gene72686 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Ceric.15G032800.1 Ceric.15G032800 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Ceric.20G005700.1 Ceric.20G005700 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Cre04.g225950 TAF1B, TAF1, HAF2 No description available 0.03 OrthoFinder output from all 47 species
Cre17.g711100 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g13542 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Dcu_g07764 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ehy_g09954 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ehy_g30103 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
MA_10428440g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_131191g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g15890.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g41800 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015144 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Sam_g26218 No alias transcriptional repressor *(AITR) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g064700.4.1 Solyc07g064700 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g36090 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 411 492
No external refs found!