Smo417629 (PACid_15405256)


Aliases : PACid_15405256

Description : 27.3.20 RNA.regulation of transcription.G2-like transcription factor family, GARP Homeodomain-like superfamily protein CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287) BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G13640.2) Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798 Bacteria - 22429 Metazoa - 974 Fungi - 991 Plants - 531 Viruses - 0 Other Eukaryotes - 9610 (source: NCBI BLink). & (chl4|512738 : 88.6


Gene families : OG_01_0000018 (Gene family) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo417629
Cluster HCCA cluster: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AT3G04030 No alias Homeodomain-like superfamily protein 0.02 Gene family
AT3G12730 No alias Homeodomain-like superfamily protein 0.03 Gene family
AT5G45580 No alias Homeodomain-like superfamily protein 0.02 Gene family
GSVIVT01030315001 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.03 Gene family
GSVIVT01032776001 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.04 Gene family
LOC_Os01g36229 Os01g0543000 No description available 0.02 Gene family
MA_120020g0010 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
MA_181986g0010 No alias 27.3.25 RNA.regulation of transcription.MYB domain... 0.02 Gene family
Solyc05g055940.3.1 Solyc05g055940.3 27.3.25 RNA.regulation of transcription.MYB domain... 0.02 Gene family
Zm00001d032249 GRMZM2G056400 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 146 192
No external refs found!