AT5G62990 (emb1692)


Aliases : emb1692

Description : Ubiquitin carboxyl-terminal hydrolase family protein


Gene families : OG_01_0001104 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001104_tree ,
OG_02_0001147 (LandPlants) Phylogenetic Tree(s): OG_02_0001147_tree ,
OG_03_0002903 (SeedPlants) Phylogenetic Tree(s): OG_03_0002903_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G62990
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00241290 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_34809 No alias WTF1 plastidial RNA basal splicing factor 0.06 Archaeplastida
LOC_Os04g24710.1 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.08 Archaeplastida
LOC_Os05g49610.1 No alias WTF1 plastidial RNA basal splicing factor 0.03 Archaeplastida
MA_158434g0010 No alias WTF1 plastidial RNA basal splicing factor 0.03 Archaeplastida
MA_175611g0010 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.02 Archaeplastida
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.04 Archaeplastida
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.04 Archaeplastida
Smo409264 No alias Protein WHATS THIS FACTOR 1 OS=Zea mays 0.02 Archaeplastida
Smo422954 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e026570_P001 No alias WTF1 plastidial RNA basal splicing factor 0.07 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.1 LandPlants
Gb_34809 No alias WTF1 plastidial RNA basal splicing factor 0.04 LandPlants
LOC_Os04g24710.1 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.08 LandPlants
MA_175611g0010 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.02 LandPlants
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.04 LandPlants
Zm00001e026570_P001 No alias WTF1 plastidial RNA basal splicing factor 0.07 LandPlants
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.09 SeedPlants
Gb_34809 No alias WTF1 plastidial RNA basal splicing factor 0.04 SeedPlants
LOC_Os04g24710.1 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.08 SeedPlants
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.02 SeedPlants
Zm00001e011811_P001 No alias Protein WHATS THIS FACTOR 1 OS=Zea mays... 0.02 SeedPlants
Zm00001e026570_P001 No alias WTF1 plastidial RNA basal splicing factor 0.06 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR021099 PORR_domain 60 397
No external refs found!