AT5G62460


Description : RING/FYVE/PHD zinc finger superfamily protein


Gene families : OG_01_0000436 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000436_tree ,
OG_02_0000506 (LandPlants) Phylogenetic Tree(s): OG_02_0000506_tree ,
OG_03_0040812 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G62460
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261170 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00105p00126340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_37740 No alias RING-v-class E3 ligase 0.02 Archaeplastida
LOC_Os02g36740.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida
LOC_Os08g33860.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida
LOC_Os11g38800.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
MA_10427291g0010 No alias RING-v-class E3 ligase 0.04 Archaeplastida
Mp8g15410.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Solyc01g020190.2.1 No alias Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc02g091230.4.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Solyc03g116030.4.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida
Gb_37740 No alias RING-v-class E3 ligase 0.02 LandPlants
LOC_Os08g33860.1 No alias RING-v-class E3 ligase 0.03 LandPlants
Mp8g15410.1 No alias RING-v-class E3 ligase 0.02 LandPlants
Smo420592 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 LandPlants
Solyc03g116030.4.1 No alias RING-v-class E3 ligase 0.03 LandPlants

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022143 DUF3675 129 248
IPR011016 Znf_RING-CH 78 123
No external refs found!