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  5. Pir_g57970

Pir_g57970 (TAF4, TAF4B)


Aliases : TAF4, TAF4B

Description : component *(TAF4) of TFIId basal transcription regulation complex & original description: none


Gene families : OG0002362 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002362_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g57970

Target Alias Description ECC score Gene Family Method Actions
Aev_g38215 TAF4, TAF4B component *(TAF4) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Aob_g22118 TAF4, TAF4B component *(TAF4) of TFIId basal transcription... 0.02 OrthoFinder output from all 47 species
GSVIVT01009365001 TAF4, TAF4B RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Zm00001e002074_P001 TAF4, TAF4B,... component TAF4 of TFIId basal transcription regulation complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005669 transcription factor TFIID complex IEA Interproscan
BP GO:0006352 DNA-templated transcription initiation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1990380 K48-linked deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR007900 TAF4_C 436 614
IPR022003 RST 122 182
No external refs found!