Pir_g57081 (PGP13)

Aliases : PGP13

Description : subfamily ABCB transporter & original description: none

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g57081
Cluster	HCCA: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00108620	PGP11,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AMTR_s00045p00109790	PGP11,...	No description available	0.02	OrthoFinder output from all 47 species
AMTR_s00045p00109940	PGP11,...	Solute transport.primary active transport.ABC...	0.04	OrthoFinder output from all 47 species
AMTR_s00049p00128460	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
Adi_g029160	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g058585	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g19611	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g20043	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g20821	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g33590	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g16050	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g37349	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g11005	PGP11	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g18063	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene05873.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene12320.t1	PGP2, Aspi01Gene12320	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62053.t1	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020952.7	PGP2	ABC transporter B family member 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01028256001	PGP11	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Len_g23455	PGP11	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g03498	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
MA_10432922g0010	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
MA_178534g0010	PGP2	ABC transporter B family member 2 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_636449g0010	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
MA_82945g0030	PGP17	ABC transporter B family member 17 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_9253g0010	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp2g21430.1	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp7g04390.1	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Nbi_g02507	PGP6	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19207	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g13619	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Smo230688	ABCB19,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Tin_g12815	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	435	584
IPR003439	ABC_transporter-like_ATP-bd	1082	1230
IPR011527	ABC1_TM_dom	741	1013
IPR011527	ABC1_TM_dom	94	365

External Links

No external refs found!

Pir_g57081 (PGP13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation