AT5G59950


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0001027 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001027_tree ,
OG_02_0000803 (LandPlants) Phylogenetic Tree(s): OG_02_0000803_tree ,
OG_03_0000994 (SeedPlants) Phylogenetic Tree(s): OG_03_0000994_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G59950
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.40 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
Cre10.g462250 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
LOC_Os06g14470.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 Archaeplastida
LOC_Os08g33120.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 Archaeplastida
MA_26328g0010 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
MA_961018g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c6_2570V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Zm00001e022419_P005 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
Zm00001e030972_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
Zm00001e033165_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
GSVIVT01030785001 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 LandPlants
LOC_Os06g14470.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 LandPlants
LOC_Os08g33120.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 LandPlants
MA_961018g0010 No alias no hits & (original description: none) 0.04 LandPlants
Pp3c25_13340V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 LandPlants
Pp3c6_2570V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 LandPlants
Zm00001e022419_P005 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 LandPlants
Zm00001e030972_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 LandPlants
Zm00001e033165_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 LandPlants
GSVIVT01030785001 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 SeedPlants
LOC_Os06g14470.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 SeedPlants
LOC_Os08g33120.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 SeedPlants
Zm00001e001243_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 SeedPlants
Zm00001e022419_P005 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 SeedPlants
Zm00001e030972_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 90 158
IPR025715 FoP_C 188 241
No external refs found!