AT5G58280

Description : AP2/B3-like transcriptional factor family protein

Gene families : OG_01_0000741 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000741_tree ,
OG_02_0001199 (LandPlants) Phylogenetic Tree(s): OG_02_0001199_tree ,
OG_03_0001296 (SeedPlants) Phylogenetic Tree(s): OG_03_0001296_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G58280
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00151100	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AMTR_s00078p00115450	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01009519001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.08	Archaeplastida
GSVIVT01024536001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.01	Archaeplastida
GSVIVT01031761001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.1	Archaeplastida
Gb_07025	No alias	transcription factor (REM)	0.03	Archaeplastida
Gb_35990	No alias	transcription factor (REM)	0.11	Archaeplastida
LOC_Os03g08620.1	No alias	transcription factor (REM)	0.13	Archaeplastida
LOC_Os06g09420.1	No alias	transcription factor (REM)	0.02	Archaeplastida
MA_10430774g0010	No alias	No annotation	0.03	Archaeplastida
MA_10433064g0010	No alias	transcription factor (REM)	0.05	Archaeplastida
MA_430451g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_59943g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Mp2g08790.1	No alias	transcription factor (REM)	0.12	Archaeplastida
Pp3c14_19410V3.1	No alias	AP2/B3-like transcriptional factor family protein	0.06	Archaeplastida
Pp3c17_16150V3.1	No alias	AP2/B3-like transcriptional factor family protein	0.11	Archaeplastida
Pp3c1_15410V3.1	No alias	AP2/B3-like transcriptional factor family protein	0.03	Archaeplastida
Pp3c2_5990V3.1	No alias	AP2/B3-like transcriptional factor family protein	0.03	Archaeplastida
Smo413242	No alias	No description available	0.06	Archaeplastida
Solyc04g079130.2.1	No alias	transcription factor (REM)	0.13	Archaeplastida
Solyc06g007530.2.1	No alias	transcription factor (REM)	0.06	Archaeplastida
Solyc06g034140.3.1	No alias	transcription factor (REM)	0.09	Archaeplastida
Zm00001e000624_P003	No alias	transcription factor (REM)	0.1	Archaeplastida
Zm00001e020584_P001	No alias	transcription factor (REM)	0.06	Archaeplastida
Zm00001e040028_P004	No alias	transcription factor (REM)	0.09	Archaeplastida
AMTR_s00077p00151100	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	LandPlants
GSVIVT01009519001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.08	LandPlants
GSVIVT01024536001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.01	LandPlants
GSVIVT01031761001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.07	LandPlants
Gb_07025	No alias	transcription factor (REM)	0.03	LandPlants
Gb_35990	No alias	transcription factor (REM)	0.1	LandPlants
LOC_Os03g08620.1	No alias	transcription factor (REM)	0.12	LandPlants
MA_10433064g0010	No alias	transcription factor (REM)	0.04	LandPlants
MA_59943g0010	No alias	no hits & (original description: none)	0.04	LandPlants
Mp2g08790.1	No alias	transcription factor (REM)	0.11	LandPlants
Pp3c14_19410V3.1	No alias	AP2/B3-like transcriptional factor family protein	0.06	LandPlants
Pp3c17_16150V3.1	No alias	AP2/B3-like transcriptional factor family protein	0.12	LandPlants
Pp3c21_16260V3.1	No alias	AP2/B3-like transcriptional factor family protein	0.02	LandPlants
Pp3c2_5990V3.1	No alias	AP2/B3-like transcriptional factor family protein	0.03	LandPlants
Solyc01g108140.4.1	No alias	transcription factor (REM)	0.02	LandPlants
Solyc04g079130.2.1	No alias	transcription factor (REM)	0.13	LandPlants
Solyc06g007530.2.1	No alias	transcription factor (REM)	0.06	LandPlants
Zm00001e000624_P003	No alias	transcription factor (REM)	0.1	LandPlants
Zm00001e020584_P001	No alias	transcription factor (REM)	0.06	LandPlants
Zm00001e040028_P004	No alias	transcription factor (REM)	0.09	LandPlants
AMTR_s00077p00151100	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	SeedPlants
GSVIVT01009519001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.06	SeedPlants
GSVIVT01024536001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.01	SeedPlants
GSVIVT01031761001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.07	SeedPlants
Gb_07025	No alias	transcription factor (REM)	0.03	SeedPlants
Gb_35990	No alias	transcription factor (REM)	0.1	SeedPlants
LOC_Os03g08620.1	No alias	transcription factor (REM)	0.11	SeedPlants
LOC_Os06g09420.1	No alias	transcription factor (REM)	0.01	SeedPlants
MA_10433064g0010	No alias	transcription factor (REM)	0.04	SeedPlants
MA_59943g0010	No alias	no hits & (original description: none)	0.04	SeedPlants
Solyc01g108140.4.1	No alias	transcription factor (REM)	0.02	SeedPlants
Solyc04g079130.2.1	No alias	transcription factor (REM)	0.1	SeedPlants
Solyc06g007530.2.1	No alias	transcription factor (REM)	0.06	SeedPlants
Zm00001e000624_P003	No alias	transcription factor (REM)	0.1	SeedPlants
Zm00001e020584_P001	No alias	transcription factor (REM)	0.06	SeedPlants
Zm00001e031956_P001	No alias	transcription factor (REM)	0.02	SeedPlants
Zm00001e040028_P004	No alias	transcription factor (REM)	0.08	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	127	215

External Links

No external refs found!

AT5G58280

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation