AT5G58230 (MSI1, MEE70, ATMSI1)

Aliases : MSI1, MEE70, ATMSI1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0002471 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002471_tree ,
OG_02_0002260 (LandPlants) Phylogenetic Tree(s): OG_02_0002260_tree ,
OG_03_0003543 (SeedPlants) Phylogenetic Tree(s): OG_03_0003543_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G58230
Cluster	HCCA: Cluster_262

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g523200	No alias	Chromatin organisation.histone modifications.histone...	0.03	Archaeplastida
Gb_03680	No alias	component CAF1c/MSI of CAF1 histone chaperone complex....	0.03	Archaeplastida
MA_70799g0010	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.03	Archaeplastida
Solyc01g104510.3.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex....	0.02	Archaeplastida
Solyc01g111590.4.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.04	Archaeplastida
Gb_03680	No alias	component CAF1c/MSI of CAF1 histone chaperone complex....	0.02	LandPlants
LOC_Os03g43890.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex....	0.02	LandPlants
MA_70799g0010	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.03	LandPlants
Solyc01g104510.3.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex....	0.02	LandPlants
Solyc01g111590.4.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.04	LandPlants
Zm00001e035979_P001	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.02	LandPlants
LOC_Os03g43890.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex....	0.02	SeedPlants
MA_70799g0010	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.03	SeedPlants
Solyc01g104510.3.1	No alias	component CAF1c/MSI of CAF1 histone chaperone complex....	0.02	SeedPlants
Zm00001e005035_P002	No alias	no hits & (original description: none)	0.02	SeedPlants
Zm00001e012412_P002	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.02	SeedPlants
Zm00001e035979_P001	No alias	component CAF1c/MSI of CAF1 histone chaperone complex	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	TAS	Interproscan
CC	GO:0005677	chromatin silencing complex	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006275	regulation of DNA replication	RCA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006333	chromatin assembly or disassembly	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006349	regulation of gene expression by genetic imprinting	IPI	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007275	multicellular organism development	IMP	Interproscan
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008283	cell population proliferation	IMP	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009555	pollen development	IGI	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009909	regulation of flower development	IMP	Interproscan
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010026	trichome differentiation	IMP	Interproscan
BP	GO:0010214	seed coat development	IMP	Interproscan
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016569	covalent chromatin modification	None	Extended
BP	GO:0016570	histone modification	RCA	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0031497	chromatin assembly	None	Extended
BP	GO:0031507	heterochromatin assembly	IMP	Interproscan
BP	GO:0031507	heterochromatin assembly	RCA	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034401	chromatin organization involved in regulation of transcription	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040029	regulation of gene expression, epigenetic	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0045787	positive regulation of cell cycle	IGI	Interproscan
BP	GO:0045787	positive regulation of cell cycle	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048316	seed development	IMP	Interproscan
BP	GO:0048366	leaf development	IMP	Interproscan
BP	GO:0048449	floral organ formation	RCA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071514	genetic imprinting	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	ISS	Interproscan
BP	GO:0097549	chromatin organization involved in negative regulation of transcription	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901990	regulation of mitotic cell cycle phase transition	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902749	regulation of cell cycle G2/M phase transition	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:1905393	plant organ formation	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	220	256
IPR001680	WD40_repeat	367	402
IPR001680	WD40_repeat	264	302
IPR022052	Histone-bd_RBBP4_N	19	88

External Links

No external refs found!

AT5G58230 (MSI1, MEE70, ATMSI1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation