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  5. Pir_g53104

Pir_g53104


Description : component *(eS26) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001368 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001368_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g53104
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT2G40510 No alias Ribosomal protein S26e family protein 0.02 OrthoFinder output from all 47 species
AT3G56340 No alias Ribosomal protein S26e family protein 0.03 OrthoFinder output from all 47 species
Aop_g17895 No alias component *(eS26) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001486.9 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre16.g682300 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Dac_g16013 No alias component *(eS26) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dac_g33608 No alias component *(eS26) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g02248 No alias component *(eS26) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01032696001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_00995 No alias component RPS26 of SSU proteome 0.02 OrthoFinder output from all 47 species
LOC_Os05g39960.1 LOC_Os05g39960 component RPS26 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp2g06210.1 No alias component RPS26 of SSU proteome 0.02 OrthoFinder output from all 47 species
Msp_g39905 No alias component *(eS26) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g22691 No alias component *(eS26) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c6_8910V3.1 Pp3c6_8910 Ribosomal protein S26e family protein 0.02 OrthoFinder output from all 47 species
Sam_g15700 No alias component *(eS26) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g48093 No alias component *(eS26) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Solyc04g008810.3.1 Solyc04g008810 component RPS26 of SSU proteome 0.03 OrthoFinder output from all 47 species
Spa_g25276 No alias component *(eS26) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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ECC Pair graph <td class="col-xs-6">macromolecule methylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">HCCA</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/732">IPR000892</a></td> <td class="col-xs-5">Ribosomal_S26e</td> <td class="col-xs-2">1</td> <td class="col-xs-2">103</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); }, function(xhr, status, error) { // Upon failure... set the tooltip content to error api.set('content.text', status + ': ' + error); }); return 'Loading...'; // Set some initial text } }, show: { effect: function() { $(this).fadeTo(500, 1); } }, hide: { effect: function() { $(this).fadeTo(500, 0); } }, position: { viewport: $(window) }, style: 'qtip-bootstrap' }); }); } $(function () { init_qtip(); $("#leafy_loader").html(get_loader_svg('loader_leafy')); init_planet_loader('loader_leafy'); $('[data-toggle="popover"]').popover({container: 'body'}); $('a[data-target=#helpModal], abbr[data-target=#helpModal]').click(function(ev) { ev.preventDefault(); var target = $(this).attr("href"); // load the url and show modal on success $("#helpModal .modal-content").load(target, function() { $("#helpModal").modal("show"); }); }); }); </script> <script src="/static/js/planet_pagination.js"></script> <script src="/static/js/planet_ajax_table.js"></script> <script type="text/javascript"> var csrf_token = "Ijg3ZDU0MDcxOWQ4MGI1M2ZhNzI1MDM4NGU5ZThjOWU2NWJlNzM3ZTYi.Gk2iMQ.jpkyNIBqeYcnAzwb30l-uV2Tis4"; $.ajaxSetup({ beforeSend: function(xhr, settings) { if (!/^(GET|HEAD|OPTIONS|TRACE)$/i.test(settings.type) && !this.crossDomain) { xhr.setRequestHeader("X-CSRFToken", csrf_token); } } }); </script> <script src="/static/js/Chart.min.js"></script> <script src="/static/js/hammer.min.js"></script> <script src="/static/js/chartjs-plugin-zoom.min.js"></script> <script> $(function () { $("#go_table").stupidtable(); $("#predicted_go_table").stupidtable(); $("#interpro_table").stupidtable(); $("#ecc_hits_table").stupidtable(); $("#coexpression_table").stupidtable(); $('[data-toggle="tooltip"]').tooltip(); $('a[data-target=#profileModal]').click(function(ev) { ev.preventDefault(); var target = $(this).attr("href"); // load the url and show modal on success $("#profileModal .modal-content").load(target, function() { $("#profileModal").modal("show"); }); }); $("#go_toggle").click(function(ev) { ev.preventDefault(); $(".parent_term").toggle(); }); $("#navbar-side a").on('click', function(event) { // Make sure this.hash has a value before overriding default behavior if (this.hash !== "") { // Prevent default anchor click behavior event.preventDefault(); // Store hash var hash = this.hash; // Using jQuery's animate() method to add smooth page scroll // The optional number (800) specifies the number of milliseconds it takes to scroll to the specified area $('html, body').animate({ scrollTop: $(hash).offset().top - 55 }, 800, function(){ // Add hash (#) to URL when done scrolling (default click behavior) window.location.hash = hash; }); } // End if }); }) $( document ).ready(function() { $.getJSON( "/profile/json/plot/1553258", function( data ) { var ctx = document.getElementById("expression-profile").getContext("2d"); data['options']['responsive'] = true; data['options']['maintainAspectRatio'] = false; data['options']['tooltips'] = { enabled: true, mode: 'label', itemSort: function(a, b, data) { conversion = {'Minimum': 0, 'Mean - Stdev':0, 'Mean': 1, 'Maximum': 2, 'Mean + Stdev': 2} if (conversion[data.datasets[a.datasetIndex].label] > conversion[data.datasets[b.datasetIndex].label]) { return -1 } else if (conversion[data.datasets[a.datasetIndex].label] < conversion[data.datasets[b.datasetIndex].label]) { return 1 } else { return 0 } }, callbacks: { afterTitle: function(tooltipItems, data) { if (data.counts[tooltipItems[0].index] == null) { return null; } else { if (data.counts[tooltipItems[0].index] == 1) { return '(1 sample)'; } else { return '(' + data.counts[tooltipItems[0].index] + ' samples)'; } } }, label: function(tooltipItems, data) { return data.datasets[tooltipItems.datasetIndex].label + ': ' + tooltipItems.yLabel.toFixed(2); } } } var myChart = new Chart(ctx, data); if (myChart.options.zoom.enabled) { $("#enable_zoom").addClass("btn-success"); $("#enable_zoom").removeClass("btn-danger"); $("#enable_zoom").removeClass("btn-default"); } else { $("#enable_zoom").addClass("btn-danger"); $("#enable_zoom").removeClass("btn-success"); $("#enable_zoom").removeClass("btn-default"); } $("#enable_zoom").click( function(ev) { ev.preventDefault(); myChart.options.zoom.enabled = ! myChart.options.zoom.enabled; if (myChart.options.zoom.enabled) { $(this).addClass("btn-success"); $(this).removeClass("btn-danger"); $(this).removeClass("btn-default"); } else { $(this).addClass("btn-danger"); $(this).removeClass("btn-success"); $(this).removeClass("btn-default"); } }); if (myChart.options.pan.enabled) { $("#enable_pan").addClass("btn-success"); $("#enable_pan").removeClass("btn-danger"); $("#enable_pan").removeClass("btn-default"); } else { $("#enable_pan").addClass("btn-danger"); $("#enable_pan").removeClass("btn-success"); $("#enable_pan").removeClass("btn-default"); } $("#enable_pan").click( function(ev) { ev.preventDefault(); myChart.options.pan.enabled = ! myChart.options.pan.enabled; if (myChart.options.pan.enabled) { $(this).addClass("btn-success"); $(this).removeClass("btn-danger"); $(this).removeClass("btn-default"); } else { $(this).addClass("btn-danger"); $(this).removeClass("btn-success"); $(this).removeClass("btn-default"); } }); }); }); </script> </body> </html>
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043414