Smo414222 (PACid_15415840)


Aliases : PACid_15415840

Description : 27.3.20 RNA.regulation of transcription.G2-like transcription factor family, GARP Homeodomain-like superfamily protein CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287) BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT2G38300.1) Has 1902 Blast hits to 1885 proteins in 114 species: Archae - 0 Bacteria - 0 Metazoa - 125 Fungi - 17 Plants - 1623 Viruses - 0 Other Eukaryotes - 137 (source: NCBI BLink). & (loc_os02g14490.1 : 117.0


Gene families : OG_01_0000018 (Gene family) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Smo414222
Cluster HCCA cluster: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AT1G79430 APL, WDY Homeodomain-like superfamily protein 0.03 Gene family
AT3G04030 No alias Homeodomain-like superfamily protein 0.02 Gene family
AT5G06800 No alias myb-like HTH transcriptional regulator family protein 0.03 Gene family
LOC_Os01g36229 Os01g0543000 No description available 0.02 Gene family
MA_120020g0010 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
MA_84935g0010 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
Solyc06g008200.3.1 Solyc06g008200.3 27.3.20 RNA.regulation of transcription.G2-like... 0.02 Gene family
Zm00001d019536 GRMZM2G162409 27.3.20 RNA.regulation of transcription.G2-like... 0.03 Gene family
Zm00001d022526 No alias 27.3.25 RNA.regulation of transcription.MYB domain... 0.02 Gene family
Zm00001d024532 GRMZM2G123308 27.3.20 RNA.regulation of transcription.G2-like... 0.03 Gene family
Zm00001d028984 GRMZM2G009060 27.3.25 RNA.regulation of transcription.MYB domain... 0.03 Gene family
Zm00001d037015 No alias 27.3.20 RNA.regulation of transcription.G2-like... 0.04 Gene family
Zm00001d046947 GRMZM2G081671 No description available 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001005 SANT/Myb 19 69
No external refs found!