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  5. Pir_g51830

Pir_g51830


Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g51830
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00126340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT3G47550 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g074839 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04464 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06624 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23685 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.11G062700.1 Ceric.11G062700 E3 ubiquitin ligase & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000789.27 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g01320 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os01g49280.1 LOC_Os01g49280 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Len_g08617 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04496 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Smo420592 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Spa_g30245 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e028572_P001 Zm00001e028572 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 88 133
IPR022143 DUF3675 140 258
No external refs found!