AT5G54990


Description : RING/U-box superfamily protein


Gene families : OG_01_0000041 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000041_tree ,
OG_02_0000046 (LandPlants) Phylogenetic Tree(s): OG_02_0000046_tree ,
OG_03_0041591 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G54990
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00043520 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G18760 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 Archaeplastida
AT1G18780 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT1G21960 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT1G50350 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.04 Archaeplastida
AT2G29840 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT2G44330 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT3G13228 No alias RING/U-box superfamily protein 0.05 Archaeplastida
GSVIVT01008897001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
LOC_Os11g05230.1 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_19897g0010 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_816375g0010 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.01 Archaeplastida
Solyc02g065650.1.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
Solyc05g007895.1.1 No alias E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.01 Archaeplastida
Zm00001e019544_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.01 Archaeplastida
Zm00001e024003_P001 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 Archaeplastida
Zm00001e024455_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e038199_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.02 Archaeplastida
AT1G50350 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.03 LandPlants
AT1G57730 No alias RING/U-box superfamily protein 0.06 LandPlants
AT2G44330 No alias RING/U-box superfamily protein 0.05 LandPlants
GSVIVT01008897001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 LandPlants
Gb_41745 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.01 LandPlants
MA_433917g0010 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.01 LandPlants
MA_76949g0010 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.01 LandPlants
MA_816375g0010 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.01 LandPlants
Zm00001e019544_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.01 LandPlants
Zm00001e024455_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e038199_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.02 LandPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 173 215
No external refs found!