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  5. Pir_g51514

Pir_g51514 (MSH6-1, ATMSH6, MSH6)


Aliases : MSH6-1, ATMSH6, MSH6

Description : not classified & original description: none


Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g51514
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00172100 MSH7, ATMSH7,... DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Len_g08764 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
MA_248700g0010 MSH7, ATMSH7, MSH6-2 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
InterPro domains Description Start Stop
IPR007860 DNA_mmatch_repair_MutS_con_dom 476 542
IPR007695 DNA_mismatch_repair_MutS-lik_N 352 465
No external refs found!